RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1123309" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21954901 21954901 PRJNA1123309_P_NODE_2058_length_935_cov_2.464037_g1812_i0 PRJNA1123309 2058 935 2.464037 23.03874595 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 130 6.35e-32   NR TEB19254.1 2494336 g1812 i0 34.5 0.85668449197861 267 153 79.9 8 90 836 1 263 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 801 130 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016
30260029 30260029 PRJNA1123309_P_NODE_6132_length_594_cov_5.255278_g5776_i0 PRJNA1123309 6132 594 5.255278 31.21635132 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 264 4.92e-87   NR XP_002778466.1 423536 g5776 i0 71.4 0.919191919191919 182 51 91.4 1 548 6 1 182 XP_002778466.1 cyclophilin, putative [Perkinsus marinus ATCC 50983] diamond 546 264 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
30702044 30702044 PRJNA1123309_P_NODE_11834_length_442_cov_2.322493_g11458_i0 PRJNA1123309 11834 442 2.322493 10.26541906 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 85.9 4.24e-17   NR TEB19254.1 2494336 g11458 i0 40.3 1.01131221719457 149 80 95 3 422 3 3 151 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 447 85.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016
32473224 32473224 PRJNA1123309_P_NODE_63879_length_243_cov_1.347059_g63499_i0 PRJNA1123309 63879 243 1.347059 3.27335337 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 57.4 1.8e-7   NR TEB19254.1 2494336 g63499 i0 45 0.740740740740741 60 33 74.1 0 20 199 138 197 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 180 57.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;