RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1123309" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123309 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6656292 6656292 PRJNA1123309_P_NODE_46606_length_253_cov_2.555556_g46226_i0 PRJNA1123309 46606 253 2.555556 6.46555668 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 Bacteria Bacteria 134 7.970000000000001e-27   NTclustered gi|971185387|gb|CP013128.1| 1749074 g46226 i0 86.179 45.4782608695652 123 17 49 0 121 243 412747 412869 Mycoplasma sp. (ex Biomphalaria glabrata) isolate Barreiro1 chromosome, complete genome blastn 11506 134 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. (ex Biomphalaria glabrata)
23230440 23230440 PRJNA1123309_P_NODE_21799_length_341_cov_1.458955_g21420_i0 PRJNA1123309 21799 341 1.458955 4.97503655 Ureaplasma diversum 42094 Bacteria Bacteria 126 1.87e-24   NTclustered gi|365822491|gb|JN935894.1| 42094 g21420 i0 86.555 47.9032258064516 119 11 34 5 223 338 2158 2274 Ureaplasma diversum strain T95 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 16335 126 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma diversum
30607220 30607220 PRJNA1123309_P_NODE_57693_length_247_cov_0.896552_g57313_i0 PRJNA1123309 57693 247 0.896552 2.21448344 Anaeroplasmataceae bacterium 2793037 Bacteria Bacteria 41.6 0.0402   NR MDE5566121.1 2793037 g57313 i0 27.6 0.923076923076923 76 47 92.3 1 243 16 14 81 MDE5566121.1 hypothetical protein [Anaeroplasmataceae bacterium] diamond 228 41.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Anaeroplasmatales Anaeroplasmataceae   Anaeroplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;