RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where bioproject = "PRJNA1123309" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123309 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2829111 2829111 PRJNA1123309_P_NODE_46143_length_255_cov_1.225275_g45763_i0 PRJNA1123309 46143 255 1.225275 3.12445125 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g45763 i0 100 0.333333333333333 29 0 11 0 24 52 39437174 39437146 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 85 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
3579467 3579467 PRJNA1123309_P_NODE_12483_length_431_cov_2.698324_g12107_i0 PRJNA1123309 12483 431 2.698324 11.62977644 Metazoa 33208 Mollusca Mollusca 767 0   NTclustered gi|1928112764|gb|MT947788.1| 6523 g12107 i0 99.761 96.9837587006961 418 1 97 0 14 431 191 608 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 41800 773 0.992238033635188 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
4105140 4105140 PRJNA1123309_P_NODE_1644_length_1024_cov_1.455310_g1419_i0 PRJNA1123309 1644 1024 1.45531 14.9023744 Metazoa 33208 Mollusca Mollusca 77 4.65e-12   NR XP_064599578.1 13599 g1419 i0 35.9 1.546875 131 69 34.6 3 1013 660 56 184 XP_064599578.1 serine-arginine protein 55-like isoform X1 [Liolophura japonica] diamond 1584 77 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
4105710 4105710 PRJNA1123309_P_NODE_68204_length_227_cov_2.012987_g67824_i0 PRJNA1123309 68204 227 2.012987 4.56948049 Octopus bimaculoides 37653 Mollusca Mollusca 52.8 0.02   NTclustered gi|2427268932|ref|XM_014917879.2| 37653 g67824 i0 100 0.123348017621145 28 0 12 0 58 85 2683 2656 PREDICTED: Octopus bimaculoides Golgi resident protein GCP60 (LOC106871429), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
7931161 7931161 PRJNA1123309_P_NODE_27047_length_311_cov_1.369748_g26667_i0 PRJNA1123309 27047 311 1.369748 4.25991628 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.029   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g26667 i0 100 0.090032154340836 28 0 9 0 224 251 8953149 8953122 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
7931653 7931653 PRJNA1123309_P_NODE_8847_length_504_cov_6.373550_g8474_i0 PRJNA1123309 8847 504 6.37355 32.122692 Mercenaria mercenaria 6596 Mollusca Mollusca 281 5.77e-71   NTclustered gi|2442058763|ref|XM_045347307.2| 6596 g8474 i0 79.592 75.2380952380952 392 80 78 0 20 411 590 199 PREDICTED: Mercenaria mercenaria uncharacterized LOC123556531 (LOC123556531), mRNA blastn 37920 281 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
9205985 9205985 PRJNA1123309_P_NODE_10148_length_474_cov_1.147132_g9772_i0 PRJNA1123309 10148 474 1.147132 5.43740568 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 148 5.19e-38   NR XP_064614058.1 13599 g9772 i0 47.7 18.8164556962025 155 81 98.1 0 9 473 535 689 XP_064614058.1 phospholipid-transporting ATPase ABCA3-like [Liolophura japonica] diamond 8919 149 0.993288590604027 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
11756889 11756889 PRJNA1123309_P_NODE_42510_length_264_cov_1.623037_g42130_i0 PRJNA1123309 42510 264 1.623037 4.28481768 Argopecten irradians 31199 Mollusca Mollusca 63.9 1.11e-5   NTclustered gi|2835395499|ref|XM_069272855.1| 31199 g42130 i0 91.304 0.647727272727273 46 4 17 0 207 252 280 235 PREDICTED: Argopecten irradians transcription initiation factor TFIID subunit 1-like (LOC138326868), mRNA blastn 171 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
13032123 13032123 PRJNA1123309_P_NODE_51311_length_251_cov_0.876404_g50931_i0 PRJNA1123309 51311 251 0.876404 2.19977404 Octopus bimaculoides 37653 Mollusca Mollusca 56.5 0.002   NTclustered gi|2427224018|ref|XM_052965610.1| 37653 g50931 i0 92.5 0.47808764940239 40 1 15 2 83 120 2498 2459 PREDICTED: Octopus bimaculoides rhomboid-related protein 4 (LOC106880131), transcript variant X1, mRNA blastn 120 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
15056619 15056619 PRJNA1123309_P_NODE_21312_length_344_cov_2.826568_g20933_i0 PRJNA1123309 21312 344 2.826568 9.72339392 Metazoa 33208 Mollusca Mollusca 603 7.159999999999998e-168   NTclustered gi|1928112764|gb|MT947788.1| 6523 g20933 i0 100 94.7906976744186 326 0 95 0 3 328 1394 1069 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 32608 603 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
15056731 15056731 PRJNA1123309_P_NODE_45792_length_256_cov_0.890710_g45412_i0 PRJNA1123309 45792 256 0.89071 2.2802176 Mytilus 6548 Mollusca Mollusca 52.8 0.023   NTclustered gi|2912412987|ref|XM_071319431.1| 6550 g45412 i0 100 0.23046875 28 0 11 0 11 38 1342 1315 PREDICTED: Mytilus edulis protein maelstrom homolog (LOC139524575), mRNA blastn 59 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
15056756 15056756 PRJNA1123309_P_NODE_56712_length_247_cov_1.775862_g56332_i0 PRJNA1123309 56712 247 1.775862 4.38637914 Mollusca 6447 Mollusca Mollusca 80.5 4.02e-16   NR XP_013067179.1 6526 g56332 i0 50 6.81376518218624 80 28 82.6 1 241 38 130 209 XP_013067179.1 cell division control protein 42 homolog [Biomphalaria glabrata] diamond 1683 80.9 0.995055624227441 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
20679652 20679652 PRJNA1123309_P_NODE_27557_length_308_cov_4.710638_g27177_i0 PRJNA1123309 27557 308 4.710638 14.50876504 Aplysia californica 6500 Mollusca Mollusca 52.8 0.029   NTclustered gi|1897936549|ref|XM_005106389.3| 6500 g27177 i0 100 0.0909090909090909 28 0 9 0 60 87 3646 3673 PREDICTED: Aplysia californica RRP12-like protein (LOC101856684), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
21955341 21955341 PRJNA1123309_P_NODE_5818_length_608_cov_1.757009_g5466_i0 PRJNA1123309 5818 608 1.757009 10.68261472 Bradybaena similaris 145626 Mollusca Mollusca 62.1 1e-4   NTclustered gi|2912991694|dbj|AP039596.1| 145626 g5466 i0 93.023 0.0707236842105263 43 1 7 1 296 336 45741853 45741895 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 15, sequence blastn 43 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
26911924 26911924 PRJNA1123309_P_NODE_66622_length_242_cov_0.923077_g66242_i0 PRJNA1123309 66622 242 0.923077 2.23384634 Ostrea edulis 37623 Mollusca Mollusca 63.9 2.59e-10   NR XP_048732595.2 37623 g66242 i0 42.4 2.46694214876033 66 37 80.6 1 40 234 65 130 XP_048732595.2 neo-calmodulin-like isoform X1 [Ostrea edulis] diamond 597 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Ostrea Ostrea edulis
27754602 27754602 PRJNA1123309_P_NODE_48504_length_252_cov_1.240223_g48124_i0 PRJNA1123309 48504 252 1.240223 3.12536196 Metazoa 33208 Mollusca Mollusca 45.4 0.00475   NR GFO18424.1 259542 g48124 i0 42.1 4.57142857142857 57 32 66.7 1 71 238 1268 1324 GFO18424.1 coiled-coil domain-containing protein 108-like [Plakobranchus ocellatus] diamond 1152 45.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Plakobranchus Plakobranchus ocellatus
28396612 28396612 PRJNA1123309_P_NODE_37406_length_277_cov_1.289216_g37026_i0 PRJNA1123309 37406 277 1.289216 3.57112832 Argopecten irradians 31199 Mollusca Mollusca 50.1 1.53e-4   NR XP_069117406.1 31199 g37026 i0 50 1.36462093862816 40 20 43.3 0 158 277 643 682 XP_069117406.1 nuclear valosin-containing protein-like [Argopecten irradians] diamond 378 50.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
29333093 29333093 PRJNA1123309_P_NODE_60829_length_245_cov_0.906977_g60449_i0 PRJNA1123309 60829 245 0.906977 2.22209365 Metazoa 33208 Mollusca Mollusca 47.8 6.67e-4   NR KAL5013780.1 13268 g60449 i0 37.2 2.74285714285714 78 48 94.3 1 233 3 880 957 KAL5013780.1 hypothetical protein ScPMuIL_008050 [Solemya velum] diamond 672 48.1 0.993762993762994 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Solemyida Solemyidae Solemya Solemya velum
29375392 29375392 PRJNA1123309_P_NODE_26829_length_312_cov_1.874477_g26449_i0 PRJNA1123309 26829 312 1.874477 5.84836824 Mactra antiquata 2302425 Mollusca Mollusca 93.6 8.07e-21   NR KAL4221988.1 2302425 g26449 i0 65 2.23076923076923 80 21 76 2 37 273 145 218 KAL4221988.1 hypothetical protein ACF0H5_018034 [Mactra antiquata] diamond 696 93.6 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Mactridae Mactra Mactra antiquata
29711575 29711575 PRJNA1123309_P_NODE_8630_length_511_cov_2.011416_g8258_i0 PRJNA1123309 8630 511 2.011416 10.27833576 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 176 1.0999999999999999e-47   NR XP_052777829.1 6604 g8258 i0 56.6 13.174168297456 159 69 93.3 0 491 15 8 166 XP_052777829.1 transitional endoplasmic reticulum ATPase-like [Mya arenaria] diamond 6732 176 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
29849132 29849132 PRJNA1123309_P_NODE_32331_length_289_cov_1.611111_g31951_i0 PRJNA1123309 32331 289 1.611111 4.65611079 Liolophura japonica 13599 Mollusca Mollusca 122 1.24e-32   NR XP_064606698.1 13599 g31951 i0 67.9 1.79584775086505 84 27 87.2 0 36 287 35 118 XP_064606698.1 inosine triphosphate pyrophosphatase-like [Liolophura japonica] diamond 519 122 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
29869851 29869851 PRJNA1123309_P_NODE_52871_length_250_cov_0.881356_g52491_i0 PRJNA1123309 52871 250 0.881356 2.20339 root 1 Root_unresolved Root_unresolved 42.7 0.0426   NR XP_060078987.1 509963 g52491 i0 32.2 3.48 59 40 70.8 0 70 246 1924 1982 XP_060078987.1 uncharacterized protein LOC132558436 [Ylistrum balloti] diamond 870 43.1 0.990719257540603 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Ylistrum Ylistrum balloti
30133046 30133046 PRJNA1123309_P_NODE_53632_length_249_cov_1.250000_g53252_i0 PRJNA1123309 53632 249 1.25 3.1125 Sinanodonta woodiana 1069815 Mollusca Mollusca 82 5.84e-16   NR KAL3883672.1 1069815 g53252 i0 56.3 5.37349397590361 64 28 77.1 0 12 203 702 765 KAL3883672.1 hypothetical protein ACJMK2_029911 [Sinanodonta woodiana] diamond 1338 82 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Unionida Unionidae Sinanodonta Sinanodonta woodiana
30607205 30607205 PRJNA1123309_P_NODE_19573_length_357_cov_0.771127_g19194_i0 PRJNA1123309 19573 357 0.771127 2.75292339 Acanthosepion pharaonis 158019 Mollusca Mollusca 57.8 7.13e-7   NR CAE1232577.1 158019 g19194 i0 40.3 1.6218487394958 72 39 58 3 137 343 141 211 CAE1232577.1 ZSWIM2 [Acanthosepion pharaonis] diamond 579 57.8 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Sepiida Sepiidae Acanthosepion Acanthosepion pharaonis
31144019 31144019 PRJNA1123309_P_NODE_51275_length_251_cov_0.876404_g50895_i0 PRJNA1123309 51275 251 0.876404 2.19977404 Haliotis asinina 109174 Mollusca Mollusca 60.1 1.22e-8   NR XP_067653127.1 109174 g50895 i0 32.1 1.94820717131474 81 54 96.8 1 4 246 81 160 XP_067653127.1 ankyrin repeat domain-containing protein 29-like [Haliotis asinina] diamond 489 60.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
31829194 31829194 PRJNA1123309_P_NODE_21117_length_346_cov_1.095238_g20738_i0 PRJNA1123309 21117 346 1.095238 3.78952348 Octopus 6643 Mollusca Mollusca 111 8.88e-26   NR CAI9730676.1 6645 g20738 i0 51.4 1.89017341040462 109 51 93.6 2 11 334 720 827 CAI9730676.1 echinoderm microtubule-associated protein-like 6 [Octopus vulgaris] diamond 654 111 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus vulgaris
32030143 32030143 PRJNA1123309_P_NODE_12978_length_424_cov_1.686610_g12602_i0 PRJNA1123309 12978 424 1.68661 7.1512264 Mya arenaria 6604 Mollusca Mollusca 79.7 3.22e-14   NR WAQ96449.1 6604 g12602 i0 40 11.4622641509434 135 44 95.5 2 15 419 241 338 WAQ96449.1 VMA5A-like protein [Mya arenaria] diamond 4860 79.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
32272560 32272560 PRJNA1123309_P_NODE_26298_length_315_cov_0.871901_g25918_i0 PRJNA1123309 26298 315 0.871901 2.74648815 Mollusca 6447 Mollusca Mollusca 160 6.599999999999998e-44   NR CAL1529805.1 6523 g25918 i0 91.1 15.0666666666667 79 7 75.2 0 9 245 509 587 CAL1529805.1 unnamed protein product [Lymnaea stagnalis] diamond 4746 160 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;