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contig_metadata

23 rows where bioproject = "PRJNA1123309" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123309 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278355 278355 PRJNA1123309_P_NODE_34261_length_285_cov_1.014151_g33881_i0 PRJNA1123309 34261 285 1.014151 2.89033035 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 364 2.9799999999999998e-96   NTclustered gi|2874253789|emb|OY969773.1| 412054 g33881 i0 91.923 129.238596491228 260 21 91 0 1 260 423157 422898 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 36833 364 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2304328 2304328 PRJNA1123309_P_NODE_42842_length_263_cov_1.768421_g42462_i0 PRJNA1123309 42842 263 1.768421 4.65094723 Gemmatimonas 173479 Bacteria Bacteria 398 2.6799999999999995e-106   NTclustered gi|470475286|ref|NR_076270.1| 173480 g42462 i0 95.219 131.140684410646 251 12 95 0 5 255 1229 979 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 34490 398 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
4105468 4105468 PRJNA1123309_P_NODE_43884_length_261_cov_1.111702_g43504_i0 PRJNA1123309 43884 261 1.111702 2.90154222 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 364 2.689999999999999e-96   NTclustered gi|575456455|gb|CP007128.1| 861299 g43504 i0 92.578 103.103448275862 256 16 97 2 8 261 3043018 3043272 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 26910 364 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5381472 5381472 PRJNA1123309_P_NODE_36385_length_279_cov_1.941748_g36005_i0 PRJNA1123309 36385 279 1.941748 5.41747692 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 104 6.99e-18   NTclustered gi|575456455|gb|CP007128.1| 861299 g36005 i0 90.909 0.275985663082437 77 7 28 0 2 78 1630188 1630264 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 77 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7931443 7931443 PRJNA1123309_P_NODE_53007_length_250_cov_0.881356_g52627_i0 PRJNA1123309 53007 250 0.881356 2.20339 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 257 4.47e-64   NTclustered gi|2874254107|emb|OY970192.1| 412054 g52627 i0 85.542 17.368 249 32 99 3 4 250 3208422 3208668 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 4342 257 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9206293 9206293 PRJNA1123309_P_NODE_36388_length_279_cov_1.888350_g36008_i0 PRJNA1123309 36388 279 1.88835 5.2684965 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 113 1.16e-20   NTclustered gi|226088597|dbj|AP009153.1| 379066 g36008 i0 82.308 0.46594982078853 130 23 47 0 22 151 175630 175501 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 130 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
13032171 13032171 PRJNA1123309_P_NODE_55591_length_248_cov_0.891429_g55211_i0 PRJNA1123309 55591 248 0.891429 2.21074392 Gemmatirosa sp. 2510638 Bacteria Bacteria 122 3.5899999999999995e-32   NR HEY0780140.1 2510638 g55211 i0 71.6 0.979838709677419 81 23 98 0 246 4 42 122 HEY0780140.1 CheB methylesterase domain-containing protein [Gemmatirosa sp.] diamond 243 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
14307278 14307278 PRJNA1123309_P_NODE_43412_length_262_cov_1.343915_g43032_i0 PRJNA1123309 43412 262 1.343915 3.5210573 uncultured Gemmatimonas sp. 221169 Bacteria Bacteria 457 4.34e-124   NTclustered gi|2908993102|gb|PV095908.1| 221169 g43032 i0 99.213 96.5725190839695 254 1 97 1 10 262 158 411 Uncultured Gemmatimonas sp. clone b95e052ff97de7274ac009cc16b7aba4 16S ribosomal RNA gene, partial sequence blastn 25302 457 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas uncultured Gemmatimonas sp.
21955325 21955325 PRJNA1123309_P_NODE_56498_length_248_cov_0.880000_g56118_i0 PRJNA1123309 56498 248 0.88 2.1824 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 231 2.68e-56   NTclustered gi|2874253728|emb|OY969570.1| 412054 g56118 i0 85.973 161.895161290323 221 25 88 5 32 248 171553 171771 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 40150 231 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26679327 26679327 PRJNA1123309_P_NODE_47981_length_253_cov_0.866667_g47601_i0 PRJNA1123309 47981 253 0.866667 2.19266751 Gemmatirosa 1706036 Bacteria Bacteria 136 5.08e-36   NR WP_025415014.1 861299 g47601 i0 81 3.77075098814229 79 15 93.7 0 251 15 339 417 WP_025415014.1 acetylxylan esterase [Gemmatirosa kalamazoonensis] diamond 954 136 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
27059411 27059411 PRJNA1123309_P_NODE_65722_length_242_cov_0.923077_g65342_i0 PRJNA1123309 65722 242 0.923077 2.23384634 Gemmatimonas 173479 Bacteria Bacteria 42 0.0426   NR WP_291162412.1 1946568 g65342 i0 57.6 1.22727272727273 33 14 40.9 0 20 118 134 166 WP_291162412.1 hypothetical protein [Gemmatimonas sp. UBA7669] diamond 297 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
27639046 27639046 PRJNA1123309_P_NODE_50524_length_251_cov_0.876404_g50144_i0 PRJNA1123309 50524 251 0.876404 2.19977404 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 61.6 3.53e-9   NR MBI3792292.1 2026742 g50144 i0 56.5 3.1792828685259 62 22 71.7 2 186 7 13 71 MBI3792292.1 SCO family protein [Gemmatimonadota bacterium] diamond 798 61.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27765367 27765367 PRJNA1123309_P_NODE_38104_length_275_cov_1.534653_g37724_i0 PRJNA1123309 38104 275 1.534653 4.22029575 Longimicrobiales bacterium 2910168 Bacteria Bacteria 171 1.07e-47   NR HEX6559043.1 2910168 g37724 i0 85.6 1.96363636363636 90 13 98.2 0 2 271 561 650 HEX6559043.1 outer membrane protein assembly factor BamA [Longimicrobiales bacterium] diamond 540 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
28396626 28396626 PRJNA1123309_P_NODE_62566_length_244_cov_0.912281_g62186_i0 PRJNA1123309 62566 244 0.912281 2.22596564 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 117 2.7000000000000003e-28   NR HEX2779855.1 2026741 g62186 i0 66.7 0.959016393442623 78 26 95.9 0 236 3 735 812 HEX2779855.1 carboxypeptidase regulatory-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 234 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28543946 28543946 PRJNA1123309_P_NODE_57807_length_247_cov_0.896552_g57427_i0 PRJNA1123309 57807 247 0.896552 2.21448344 Bacteria 2 Bacteria Bacteria 116 6.91e-30   NR MDQ3208438.1 2026742 g57427 i0 90 1.7004048582996 70 7 85 0 38 247 1 70 MDQ3208438.1 cytochrome c [Gemmatimonadota bacterium] diamond 420 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28870174 28870174 PRJNA1123309_P_NODE_38968_length_273_cov_1.475000_g38588_i0 PRJNA1123309 38968 273 1.475 4.02675 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 48.1 3.96e-4   NR HEX9705446.1 2448054 g38588 i0 38.8 0.934065934065934 85 48 89 1 28 270 20 104 HEX9705446.1 hypothetical protein [Gemmatimonadales bacterium] diamond 255 48.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28901640 28901640 PRJNA1123309_P_NODE_5688_length_614_cov_0.955638_g5339_i0 PRJNA1123309 5688 614 0.955638 5.86761732 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 47.8 0.0154   NR HEY4130013.1 2026741 g5339 i0 34 0.503257328990228 103 60 47.4 3 372 82 169 269 HEY4130013.1 DNA recombination protein RmuC [Gemmatimonadaceae bacterium] diamond 309 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29406963 29406963 PRJNA1123309_P_NODE_64689_length_243_cov_0.917647_g64309_i0 PRJNA1123309 64689 243 0.917647 2.22988221 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 56.6 4.95e-7   NR HEY7611715.1 2448054 g64309 i0 54.3 0.567901234567901 46 20 55.6 1 31 165 430 475 HEY7611715.1 PAS domain S-box protein [Gemmatimonadales bacterium] diamond 138 56.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29533321 29533321 PRJNA1123309_P_NODE_6990_length_562_cov_1.196319_g6629_i0 PRJNA1123309 6990 562 1.196319 6.72331278 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 46.2 0.0415   NR GJG88030.1 2839016 g6629 i0 35.2 0.469750889679715 88 48 47 2 165 428 58 136 GJG88030.1 penicillin-binding protein [Gemmatimonadetes bacterium T265] diamond 264 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
30291780 30291780 PRJNA1123309_P_NODE_64692_length_243_cov_0.917647_g64312_i0 PRJNA1123309 64692 243 0.917647 2.22988221 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 118 1.08e-29   NR HJR15400.1 2448054 g64312 i0 76.6 1.88888888888889 77 16 95.1 1 234 4 263 337 HJR15400.1 hypothetical protein [Gemmatimonadales bacterium] diamond 459 118 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30575471 30575471 PRJNA1123309_P_NODE_42973_length_263_cov_1.410526_g42593_i0 PRJNA1123309 42973 263 1.410526 3.70968338 Longimicrobium sp. 2029185 Bacteria Bacteria 42.7 0.0443   NR HVH13180.1 2029185 g42593 i0 37.3 0.855513307984791 75 42 82.1 2 253 38 141 213 HVH13180.1 diguanylate cyclase [Longimicrobium sp.] diamond 225 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30891839 30891839 PRJNA1123309_P_NODE_60634_length_245_cov_0.906977_g60254_i0 PRJNA1123309 60634 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 165 2.7399999999999997e-48   NR MFL5562939.1 2026741 g60254 i0 93.6 0.955102040816327 78 5 95.5 0 6 239 227 304 MFL5562939.1 lipoate--protein ligase [Gemmatimonadaceae bacterium] diamond 234 165 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31966643 31966643 PRJNA1123309_P_NODE_48078_length_253_cov_0.866667_g47698_i0 PRJNA1123309 48078 253 0.866667 2.19266751 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 56.2 2.25e-7   NR MBK7786953.1 2026742 g47698 i0 40.5 0.936758893280632 79 37 92.5 2 237 4 101 170 MBK7786953.1 hypothetical protein [Gemmatimonadota bacterium] diamond 237 56.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;