RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1123309" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2828953 2828953 PRJNA1123309_P_NODE_32763_length_288_cov_1.674419_g32383_i0 PRJNA1123309 32763 288 1.674419 4.82232672 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 460 3.74e-125   NTclustered gi|330902856|gb|JF298254.1| 1017091 g32383 i0 96.466 59.3854166666667 283 3 98 5 1 283 1108 833 Cochliopodium larifeili clone 902 18S ribosomal RNA gene, partial sequence blastn 17103 460 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
11232304 11232304 PRJNA1123309_P_NODE_30189_length_296_cov_1.381166_g29809_i0 PRJNA1123309 30189 296 1.381166 4.08825136 root 1 Root_unresolved Root_unresolved 355 1.87e-93   NTclustered gi|909719646|gb|KT185626.1| 5755 g29809 i0 88.333 51.2871621621622 300 29 99 5 3 296 3965 3666 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15181 355 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28112360 28112360 PRJNA1123309_P_NODE_55725_length_248_cov_0.891429_g55345_i0 PRJNA1123309 55725 248 0.891429 2.21074392 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 2.21e-19   NR XP_004337776.1 1257118 g55345 i0 54.5 0.931451612903226 77 26 93.1 1 15 245 96 163 XP_004337776.1 GPI anchored endo1,3(4)-beta-glucanase [Acanthamoeba castellanii str. Neff] diamond 231 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29659200 29659200 PRJNA1123309_P_NODE_63450_length_244_cov_0.900585_g63070_i0 PRJNA1123309 63450 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.6 3.81e-13   NR XP_004344150.1 1257118 g63070 i0 45.3 0.922131147540984 75 37 91 3 222 1 86 157 XP_004344150.1 zinc finger, zz type domain containing protein [Acanthamoeba castellanii str. Neff] diamond 225 73.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;