RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1123309" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278603 278603 PRJNA1123309_P_NODE_58341_length_246_cov_2.369942_g57961_i0 PRJNA1123309 58341 246 2.369942 5.83005732 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 226 1.2399999999999997e-54   NTclustered gi|238617605|gb|FJ973380.1| 45107 g57961 i0 83.658 40.239837398374 257 24 100 12 1 246 1615 1864 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 9899 226 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
9957029 9957029 PRJNA1123309_P_NODE_30548_length_294_cov_9.800905_g30168_i0 PRJNA1123309 30548 294 9.800905 28.8146607 Sandona 1239209 SAR_Eukaryotes SAR_Eukaryotes 542 1.33e-149   NTclustered gi|219524789|gb|EU709152.1| 175275 g30168 i0 100 99.6360544217687 293 0 99 0 1 293 616 908 Uncultured cercozoan isolate HetPan20 18S ribosomal RNA gene, partial sequence blastn 29293 542 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
9957060 9957060 PRJNA1123309_P_NODE_36968_length_278_cov_1.351220_g36588_i0 PRJNA1123309 36968 278 1.35122 3.7563916 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 455 1.67e-123   NTclustered gi|219524805|gb|EU709168.1| 175275 g36588 i0 97.048 97.5719424460432 271 6 97 2 10 278 525 795 Uncultured cercozoan isolate H24p79p118t11 18S ribosomal RNA gene, partial sequence blastn 27125 455 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
13031867 13031867 PRJNA1123309_P_NODE_27151_length_310_cov_4.649789_g26771_i0 PRJNA1123309 27151 310 4.649789 14.4143459 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 327 4.3e-85   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g26771 i0 86.711 34.8677419354839 301 32 97 7 5 304 4008 3715 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 10809 327 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
30512484 30512484 PRJNA1123309_P_NODE_53373_length_249_cov_1.767045_g52993_i0 PRJNA1123309 53373 249 1.767045 4.39994205 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.26e-5   NR MES1916146.1 1215613 g52993 i0 44.6 0.674698795180723 56 29 67.5 2 235 68 12 65 MES1916146.1 hypothetical protein [Cercozoa sp. M6MM] diamond 168 49.3 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;