RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1123309" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5381839 5381839 PRJNA1123309_P_NODE_9165_length_497_cov_1.301887_g8791_i0 PRJNA1123309 9165 497 1.301887 6.47037839 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.049   NTclustered gi|820691464|tpe|LN714483.1| 572307 g8791 i0 100 0.112676056338028 28 0 6 0 23 50 3391386 3391359 TPA_asm: Neospora caninum Liverpool, chromosome chrVIII, complete genome blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
15581106 15581106 PRJNA1123309_P_NODE_31913_length_290_cov_1.811060_g31533_i0 PRJNA1123309 31913 290 1.81106 5.252074 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2787666010|ref|XM_067327603.1| 310047 g31533 i0 92.308 0.23448275862069 39 3 13 0 187 225 861 823 Cryptosporidium bovis uncharacterized protein (FG379_002000), partial mRNA blastn 68 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
26679328 26679328 PRJNA1123309_P_NODE_51261_length_251_cov_0.876404_g50881_i0 PRJNA1123309 51261 251 0.876404 2.19977404 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 141 4.46e-37   NR EPR60068.1 507601 g50881 i0 89.9 8.49800796812749 79 8 94.4 0 239 3 155 233 EPR60068.1 flavoprotein subunit of succinate dehydrogenase [Toxoplasma gondii GT1] diamond 2133 142 0.992957746478873 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
28617811 28617811 PRJNA1123309_P_NODE_42647_length_264_cov_1.256545_g42267_i0 PRJNA1123309 42647 264 1.256545 3.3172788 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 121 2.6799999999999996e-32   NR OEH76901.1 88456 g42267 i0 73.8 2.85227272727273 84 22 95.5 0 11 262 88 171 OEH76901.1 ribosomal protein rpl19 [Cyclospora cayetanensis] diamond 753 121 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;