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contig_metadata

15 rows where bioproject = "PRJNA1123309", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 15 ✖

tax_kingdom 1

  • Pseudomonadati · 15 ✖

bioproject 1

  • PRJNA1123309 · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278322 278322 PRJNA1123309_P_NODE_30961_length_293_cov_1.381818_g30581_i0 PRJNA1123309 30961 293 1.381818 4.04872674 Peredibacter starrii 28202 Bacteria Bacteria 477 3.78e-130   NTclustered gi|2631252187|gb|CP139487.1| 28202 g30581 i0 96.528 295.740614334471 288 10 98 0 6 293 511374 511661 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 86652 477 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
13031854 13031854 PRJNA1123309_P_NODE_26011_length_316_cov_1.526749_g25631_i0 PRJNA1123309 26011 316 1.526749 4.82452684 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 52.8 0.03   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g25631 i0 96.875 0.10126582278481 32 0 10 1 134 164 2476842 2476873 Bdellovibrio sp. qaytius chromosome, complete genome blastn 32 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
15056772 15056772 PRJNA1123309_P_NODE_62232_length_244_cov_0.912281_g61852_i0 PRJNA1123309 62232 244 0.912281 2.22596564 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 109 2.63e-26   NR MFL5814622.1 3034169 g61852 i0 93.2 0.725409836065574 59 4 72.5 0 178 2 1 59 MFL5814622.1 sigma-54 interaction domain-containing protein [Bdellovibrionia bacterium] diamond 177 109 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
18129803 18129803 PRJNA1123309_P_NODE_13055_length_423_cov_1.780000_g12679_i0 PRJNA1123309 13055 423 1.78 7.5294 Peredibacter starrii 28202 Bacteria Bacteria 684 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g12679 i0 96.181 151.03073286052 419 14 99 1 7 423 512140 511722 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 63886 684 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
27449592 27449592 PRJNA1123309_P_NODE_61563_length_245_cov_0.906977_g61183_i0 PRJNA1123309 61563 245 0.906977 2.22209365 Oligoflexus sp. 1971216 Bacteria Bacteria 150 5.219999999999999e-43   NR MBC7530283.1 1971216 g61183 i0 89.6 1.88571428571429 77 8 94.3 0 9 239 59 135 MBC7530283.1 YmdB family metallophosphoesterase [Oligoflexus sp.] diamond 462 150 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
28007153 28007153 PRJNA1123309_P_NODE_32865_length_288_cov_1.390698_g32485_i0 PRJNA1123309 32865 288 1.390698 4.00521024 Bacteria 2 Bacteria Bacteria 137 1.68e-35   NR OFZ12845.1 1797384 g32485 i0 68.2 1.83333333333333 88 28 91.7 0 265 2 334 421 OFZ12845.1 MAG: hypothetical protein A2X86_08430 [Bdellovibrionales bacterium GWA2_49_15] diamond 528 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium GWA2_49_15
28428298 28428298 PRJNA1123309_P_NODE_63206_length_244_cov_0.912281_g62826_i0 PRJNA1123309 63206 244 0.912281 2.22596564 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 120 2.0099999999999997e-30   NR MBA2404888.1 2053517 g62826 i0 83.1 0.94672131147541 77 13 94.7 0 233 3 295 371 MBA2404888.1 ABC transporter substrate-binding protein [Bdellovibrionales bacterium] diamond 231 120 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29690825 29690825 PRJNA1123309_P_NODE_33550_length_286_cov_1.849765_g33170_i0 PRJNA1123309 33550 286 1.849765 5.2903279 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 144 4.08e-41   NR MBX9767865.1 2053517 g33170 i0 90.8 0.797202797202797 76 7 79.7 0 59 286 1 76 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 228 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29817317 29817317 PRJNA1123309_P_NODE_62431_length_244_cov_0.912281_g62051_i0 PRJNA1123309 62431 244 0.912281 2.22596564 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 63.9 3.19e-11   NR MFL5815226.1 3034169 g62051 i0 75 0.442622950819672 36 9 44.3 0 109 2 10 45 MFL5815226.1 hypothetical protein [Bdellovibrionia bacterium] diamond 108 63.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
30133049 30133049 PRJNA1123309_P_NODE_61112_length_245_cov_0.906977_g60732_i0 PRJNA1123309 61112 245 0.906977 2.22209365 Peredibacter starrii 28202 Bacteria Bacteria 104 7.420000000000001e-27   NR WP_321398416.1 28202 g60732 i0 84.4 0.783673469387755 64 10 78.4 0 4 195 60 123 WP_321398416.1 30S ribosome-binding factor RbfA [Peredibacter starrii] diamond 192 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
30196409 30196409 PRJNA1123309_P_NODE_55232_length_248_cov_1.325714_g54852_i0 PRJNA1123309 55232 248 1.325714 3.28777072 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 59.3 5.63e-8   NR MBS1968655.1 2053517 g54852 i0 42.3 1.80241935483871 71 41 85.9 0 3 215 148 218 MBS1968655.1 hypothetical protein [Bdellovibrionales bacterium] diamond 447 59.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31555817 31555817 PRJNA1123309_P_NODE_39376_length_272_cov_1.417085_g38996_i0 PRJNA1123309 39376 272 1.417085 3.8544712 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 48.1 3.38e-4   NR MDX9730915.1 2053517 g38996 i0 32.7 0.606617647058823 55 37 60.7 0 171 7 32 86 MDX9730915.1 hypothetical protein [Bdellovibrionales bacterium] diamond 165 48.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31776926 31776926 PRJNA1123309_P_NODE_58977_length_246_cov_0.901734_g58597_i0 PRJNA1123309 58977 246 0.901734 2.21826564 Oligoflexus sp. 1971216 Bacteria Bacteria 118 1.13e-28   NR MBC7530237.1 1971216 g58597 i0 75 1.8780487804878 76 17 92.7 1 14 241 733 806 MBC7530237.1 protein kinase [Oligoflexus sp.] diamond 462 118 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
31808597 31808597 PRJNA1123309_P_NODE_40097_length_270_cov_1.771574_g39717_i0 PRJNA1123309 40097 270 1.771574 4.7832498 Oligoflexia bacterium 2599941 Bacteria Bacteria 64.7 9.35e-10   NR MCM2323379.1 2599941 g39717 i0 41.9 0.955555555555556 86 44 95.6 1 260 3 186 265 MCM2323379.1 hypothetical protein [Oligoflexia bacterium] diamond 258 64.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
32219975 32219975 PRJNA1123309_P_NODE_61338_length_245_cov_0.906977_g60958_i0 PRJNA1123309 61338 245 0.906977 2.22209365 Peredibacter starrii 28202 Bacteria Bacteria 58.2 1.42e-7   NR WP_321398586.1 28202 g60958 i0 32.1 0.955102040816327 78 49 94.3 2 14 244 687 761 WP_321398586.1 hypothetical protein [Peredibacter starrii] diamond 234 58.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;