RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1123309", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA1123309 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26626990 26626990 PRJNA1123309_P_NODE_53601_length_249_cov_1.301136_g53221_i0 PRJNA1123309 53601 249 1.301136 3.23982864 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 47 0.00127   NR RJU88526.1 2163009 g53221 i0 40.8 0.855421686746988 71 40 85.5 1 23 235 485 553 RJU88526.1 MAG: hypothetical protein DWC02_01490, partial [Candidatus Poseidoniales archaeon] diamond 213 47 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon
28575225 28575225 PRJNA1123309_P_NODE_29567_length_299_cov_1.292035_g29187_i0 PRJNA1123309 29567 299 1.292035 3.86318465 root 1 Root_unresolved Root_unresolved 64.3 6.13e-10   NR HLF07260.1 1906666 g29187 i0 62.5 2.47826086956522 48 18 48.2 0 285 142 166 213 HLF07260.1 GTP cyclohydrolase II [Thermoplasmata archaeon] diamond 741 64.3 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31903438 31903438 PRJNA1123309_P_NODE_52297_length_250_cov_0.881356_g51917_i0 PRJNA1123309 52297 250 0.881356 2.20339 Thermoplasmata archaeon 1906666 Archaea Archaea 70.9 2.84e-12   NR RLF65297.1 1906666 g51917 i0 50.8 0.732 61 30 73.2 0 184 2 192 252 RLF65297.1 MAG: hypothetical protein DRN30_04235 [Thermoplasmata archaeon] diamond 183 70.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;