RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1123309", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 9 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 9 ✖

bioproject 1

  • PRJNA1123309 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278103 278103 PRJNA1123309_P_NODE_15181_length_396_cov_2.114551_g14802_i0 PRJNA1123309 15181 396 2.114551 8.37362196 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 693 0   NTclustered gi|753176482|gb|KM821047.2| 79327 g14802 i0 100 19.4141414141414 375 0 95 0 1 375 13322 12948 Schmidtea mediterranea mitochondrion, complete genome blastn 7688 693 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
7931484 7931484 PRJNA1123309_P_NODE_55447_length_248_cov_0.891429_g55067_i0 PRJNA1123309 55447 248 0.891429 2.21074392 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 340 4.27e-89   NTclustered gi|21307911|gb|AY067278.1| 79327 g55067 i0 93.636 0.887096774193548 220 12 88 2 2 219 420 639 Schmidtea mediterranea clone hsp70 unknown mRNA sequence blastn 220 340 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
9206560 9206560 PRJNA1123309_P_NODE_62728_length_244_cov_0.912281_g62348_i0 PRJNA1123309 62728 244 0.912281 2.22596564 Metazoa 33208 Platyhelminthes Platyhelminthes 124 2.02e-33   NR VEL10592.1 117903 g62348 i0 70.1 5.66803278688525 77 23 94.7 0 231 1 95 171 VEL10592.1 unnamed protein product [Protopolystoma xenopodis] diamond 1383 125 0.992 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Protopolystoma Protopolystoma xenopodis
18130250 18130250 PRJNA1123309_P_NODE_52375_length_250_cov_0.881356_g51995_i0 PRJNA1123309 52375 250 0.881356 2.20339 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 267 7.43e-67   NTclustered gi|1122821607|gb|AY067141.2| 79327 g51995 i0 100 0.576 144 0 58 0 17 160 425 282 Schmidtea mediterranea clone HB.19.4g unknown mRNA sequence blastn 144 267 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
24504407 24504407 PRJNA1123309_P_NODE_49700_length_252_cov_0.871508_g49320_i0 PRJNA1123309 49700 252 0.871508 2.19620016 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 342 1.21e-89   NTclustered gi|21308966|gb|AY068333.1| 79327 g49320 i0 97.938 0.76984126984127 194 4 77 0 59 252 45 238 Schmidtea mediterranea clone H.31.6e(T3) unknown mRNA sequence blastn 194 342 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
26932832 26932832 PRJNA1123309_P_NODE_47982_length_253_cov_0.866667_g47602_i0 PRJNA1123309 47982 253 0.866667 2.19266751 Platyhelminthes 6157 Platyhelminthes Platyhelminthes 82.4 1.68e-17   NR PAA92643.1 282301 g47602 i0 58.7 2.31225296442688 63 26 74.7 0 197 9 2 64 PAA92643.1 hypothetical protein BOX15_Mlig022705g1 [Macrostomum lignano] diamond 585 82.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
27628260 27628260 PRJNA1123309_P_NODE_8884_length_504_cov_1.064965_g8511_i0 PRJNA1123309 8884 504 1.064965 5.3674236 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.8 1.04e-5   NR VZI22467.1 99802 g8511 i0 27.3 5.94047619047619 128 85 76.2 3 120 503 139 258 VZI22467.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 2994 56.2 0.99288256227758 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
31702878 31702878 PRJNA1123309_P_NODE_41277_length_267_cov_1.829897_g40897_i0 PRJNA1123309 41277 267 1.829897 4.88582499 Platyhelminthes 6157 Platyhelminthes Platyhelminthes 94.4 3.58e-20   NR VDL17052.1 6216 g40897 i0 55.6 3.61797752808989 81 36 91 0 11 253 1538 1618 VDL17052.1 unnamed protein product [Hymenolepis diminuta] diamond 966 94.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Hymenolepididae Hymenolepis Hymenolepis diminuta
31808591 31808591 PRJNA1123309_P_NODE_30057_length_297_cov_0.995536_g29677_i0 PRJNA1123309 30057 297 0.995536 2.95674192 Calicophoron daubneyi 300641 Platyhelminthes Platyhelminthes 77.8 4.51e-15   NR CAL5130763.1 300641 g29677 i0 35.9 0.929292929292929 92 59 92.9 0 1 276 122 213 CAL5130763.1 unnamed protein product [Calicophoron daubneyi] diamond 276 77.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Paramphistomidae Calicophoron Calicophoron daubneyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;