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contig_metadata

17 rows where bioproject = "PRJNA1123309", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 17 ✖

bioproject 1

  • PRJNA1123309 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278566 278566 PRJNA1123309_P_NODE_54441_length_249_cov_0.886364_g54061_i0 PRJNA1123309 54441 249 0.886364 2.20704636 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.46e-121   NTclustered gi|351058790|emb|FO080768.1| 6239 g54061 i0 99.592 2.92771084337349 245 1 98 0 4 248 38619 38375 Caenorhabditis elegans Cosmid C33H5, complete sequence blastn 729 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
278690 278690 PRJNA1123309_P_NODE_66601_length_242_cov_0.923077_g66221_i0 PRJNA1123309 66601 242 0.923077 2.23384634 Caenorhabditis elegans 6239 Nematoda Nematoda 396 8.739999999999996e-106   NTclustered gi|1972262903|ref|NM_065577.9| 6239 g66221 i0 99.539 4.50413223140496 217 1 90 0 1 217 217 1 Caenorhabditis elegans Small ribosomal subunit protein uS2 (rpsa-1), mRNA blastn 1090 396 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10481802 10481802 PRJNA1123309_P_NODE_25249_length_320_cov_1.688259_g24869_i0 PRJNA1123309 25249 320 1.688259 5.4024288 Diploscapter pachys 2018661 Nematoda Nematoda 65.5 2.45e-10   NR PAV60849.1 2018661 g24869 i0 42.3 1.265625 71 41 66.6 0 20 232 79 149 PAV60849.1 hypothetical protein WR25_02269 [Diploscapter pachys] diamond 405 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
14307527 14307527 PRJNA1123309_P_NODE_65752_length_242_cov_0.923077_g65372_i0 PRJNA1123309 65752 242 0.923077 2.23384634 Caenorhabditis elegans 6239 Nematoda Nematoda 429 8.619999999999998e-116   NTclustered gi|1972266897|ref|NM_001028103.4| 6239 g65372 i0 100 5.79338842975207 232 0 96 0 1 232 4872 4641 Caenorhabditis elegans Vitellogenin-6 (vit-6), mRNA blastn 1402 429 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20679871 20679871 PRJNA1123309_P_NODE_46217_length_254_cov_2.580110_g45837_i0 PRJNA1123309 46217 254 2.58011 6.5534794 Strongyloides papillosus 174720 Nematoda Nematoda 75 4.92e-9   NTclustered gi|687022641|emb|LM525555.1| 174720 g45837 i0 89.655 1.31102362204724 58 6 23 0 173 230 601610 601553 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 333 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
20680031 20680031 PRJNA1123309_P_NODE_62657_length_244_cov_0.912281_g62277_i0 PRJNA1123309 62657 244 0.912281 2.22596564 Caenorhabditis elegans 6239 Nematoda Nematoda 405 1.47e-108   NTclustered gi|1734330052|ref|NM_068920.4| 6239 g62277 i0 99.55 3.22950819672131 222 1 91 0 1 222 253 32 Caenorhabditis elegans UPF0642 protein YBL028C (C49H3.3), mRNA blastn 788 405 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25255436 25255436 PRJNA1123309_P_NODE_8240_length_522_cov_17.436526_g7871_i0 PRJNA1123309 8240 522 17.436526 91.01866572 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 375 2.6699999999999997e-99   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g7871 i0 85.135 72.1034482758621 370 51 70 4 6 373 940 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 37638 375 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
27480963 27480963 PRJNA1123309_P_NODE_13503_length_417_cov_1.427326_g13126_i0 PRJNA1123309 13503 417 1.427326 5.95194942 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 50.1 6.39e-4   NR KAE9554332.1 2598192 g13126 i0 59.6 0.37410071942446 52 21 37.4 0 261 416 87 138 KAE9554332.1 hypothetical protein FO519_002442 [Halicephalobus sp. NKZ332] diamond 156 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
27723206 27723206 PRJNA1123309_P_NODE_19144_length_360_cov_1.125436_g18765_i0 PRJNA1123309 19144 360 1.125436 4.0515696 Trichinella 6333 Nematoda Nematoda 52 7.76e-5   NR XP_003369366.1 6334 g18765 i0 43.3 1 60 33 50 1 352 173 552 610 XP_003369366.1 protein disulfide-isomerase A4 [Trichinella spiralis] diamond 360 52 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28227696 28227696 PRJNA1123309_P_NODE_22746_length_335_cov_1.175573_g22367_i0 PRJNA1123309 22746 335 1.175573 3.93816955 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.5 1.6e-20   NR XP_042929296.1 6279 g22367 i0 49.4 12.4298507462687 87 44 77.9 0 16 276 283 369 XP_042929296.1 splicing factor, CC1-like family protein [Brugia malayi] diamond 4164 95.9 0.995828988529718 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
29154676 29154676 PRJNA1123309_P_NODE_26909_length_312_cov_1.255230_g26529_i0 PRJNA1123309 26909 312 1.25523 3.9163176 Auanema sp. JU1783 2878363 Nematoda Nematoda 43.9 0.0325   NR CAI4227693.1 2878363 g26529 i0 40.3 0.596153846153846 62 35 57.7 1 293 114 295 356 CAI4227693.1 unnamed protein product [Auanema sp. JU1783] diamond 186 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
29869850 29869850 PRJNA1123309_P_NODE_48851_length_252_cov_0.871508_g48471_i0 PRJNA1123309 48851 252 0.871508 2.19620016 root 1 Root_unresolved Root_unresolved 69.3 1.91e-11   NR KFD62438.1 68888 g48471 i0 68 5.36904761904762 50 15 58.3 1 192 46 1851 1900 KFD62438.1 hypothetical protein M514_10706, partial [Trichuris suis] diamond 1353 69.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30449537 30449537 PRJNA1123309_P_NODE_13653_length_415_cov_0.982456_g13276_i0 PRJNA1123309 13653 415 0.982456 4.0771924 Steinernema carpocapsae 34508 Nematoda Nematoda 75.9 6.47e-13   NR TKR73650.1 34508 g13276 i0 36.4 2.58072289156626 132 80 95.4 3 17 412 478 605 TKR73650.1 hypothetical protein L596_020936 [Steinernema carpocapsae] diamond 1071 75.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
31081334 31081334 PRJNA1123309_P_NODE_28355_length_305_cov_0.905172_g27975_i0 PRJNA1123309 28355 305 0.905172 2.7607746 Caenorhabditis angaria 860376 Nematoda Nematoda 48.5 7.15e-4   NR CAI5455118.1 860376 g27975 i0 62.9 0.344262295081967 35 12 34.4 1 177 281 355 388 CAI5455118.1 unnamed protein product [Caenorhabditis angaria] diamond 105 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
31860863 31860863 PRJNA1123309_P_NODE_56257_length_248_cov_0.891429_g55877_i0 PRJNA1123309 56257 248 0.891429 2.21074392 Rhabditida 6236 Nematoda Nematoda 42.7 0.0366   NR VDM68374.1 40348 g55877 i0 34.7 1.63306451612903 75 47 90.7 1 7 231 43 115 VDM68374.1 unnamed protein product [Strongylus vulgaris] diamond 405 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
32283454 32283454 PRJNA1123309_P_NODE_60599_length_245_cov_0.906977_g60219_i0 PRJNA1123309 60599 245 0.906977 2.22209365 Thelazia callipaeda 103827 Nematoda Nematoda 50.1 1.01e-4   NR VDN08389.1 103827 g60219 i0 41.7 2.4 60 29 73.5 1 39 218 422 475 VDN08389.1 unnamed protein product [Thelazia callipaeda] diamond 588 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda
32714546 32714546 PRJNA1123309_P_NODE_26580_length_313_cov_1.283333_g26200_i0 PRJNA1123309 26580 313 1.283333 4.01683229 Metazoa 33208 Nematoda Nematoda 125 1.7599999999999998e-31   NR TKR62862.1 34508 g26200 i0 50.5 5.65495207667732 99 49 94.9 0 10 306 314 412 TKR62862.1 hypothetical protein L596_026769 [Steinernema carpocapsae] diamond 1770 125 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;