RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1123309", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1123309 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30765301 30765301 PRJNA1123309_P_NODE_54294_length_249_cov_0.886364_g53914_i0 PRJNA1123309 54294 249 0.886364 2.20704636 Fidelibacterota bacterium 2026760 Bacteria Bacteria 43.9 0.0162   NR MFP4547881.1 2026760 g53914 i0 42.6 0.819277108433735 68 38 80.7 1 207 7 324 391 MFP4547881.1 beta-glucosidase BglX [Fidelibacterota bacterium] diamond 204 43.9 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31808607 31808607 PRJNA1123309_P_NODE_59677_length_246_cov_0.901734_g59297_i0 PRJNA1123309 59677 246 0.901734 2.21826564 Fidelibacterota bacterium 2026760 Bacteria Bacteria 50.8 5.68e-5   NR MAI87174.1 2026760 g59297 i0 50 0.536585365853659 44 22 53.7 0 34 165 36 79 MAI87174.1 hypothetical protein [Fidelibacterota bacterium] diamond 132 50.8 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32599516 32599516 PRJNA1123309_P_NODE_53720_length_249_cov_0.886364_g53340_i0 PRJNA1123309 53720 249 0.886364 2.20704636 Fidelibacterota bacterium 2026760 Bacteria Bacteria 125 3.04e-32   NR RKY51011.1 2026760 g53340 i0 62 1.89156626506024 79 30 95.2 0 2 238 136 214 RKY51011.1 MAG: diaminopimelate decarboxylase [Fidelibacterota bacterium] diamond 471 125 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;