RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1123309", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1123309 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1552676 1552676 PRJNA1123309_P_NODE_17522_length_373_cov_1.496667_g17143_i0 PRJNA1123309 17522 373 1.496667 5.58256791 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 9.59e-23   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g17143 i0 81.818 0.568364611260054 143 26 38 0 26 168 148 290 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 212 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18130366 18130366 PRJNA1123309_P_NODE_64375_length_243_cov_0.917647_g63995_i0 PRJNA1123309 64375 243 0.917647 2.22988221 uncultured Apusomonadidae 1675541 Root_unresolved Root_unresolved 287 5.52e-73   NTclustered gi|1110843314|gb|KY077727.1| 1675541 g63995 i0 89.778 26.1069958847737 225 22 93 1 1 225 707 484 Uncultured Apusomonadidae clone Apu_RSA25-7 18S ribosomal RNA gene, partial sequence blastn 6344 287 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae   uncultured Apusomonadidae
27122271 27122271 PRJNA1123309_P_NODE_50242_length_251_cov_1.011236_g49862_i0 PRJNA1123309 50242 251 1.011236 2.53820236 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 8.28e-23   NR XP_013759207.1 461836 g49862 i0 51.3 3.71713147410359 78 38 93.2 0 236 3 112 189 XP_013759207.1 glucoamylase [Thecamonas trahens ATCC 50062] diamond 933 102 0.990196078431373 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;