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contig_metadata

30 rows where bioproject = "PRJNA1123309" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 30 ✖

bioproject 1

  • PRJNA1123309 · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2828953 2828953 PRJNA1123309_P_NODE_32763_length_288_cov_1.674419_g32383_i0 PRJNA1123309 32763 288 1.674419 4.82232672 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 460 3.74e-125   NTclustered gi|330902856|gb|JF298254.1| 1017091 g32383 i0 96.466 59.3854166666667 283 3 98 5 1 283 1108 833 Cochliopodium larifeili clone 902 18S ribosomal RNA gene, partial sequence blastn 17103 460 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
2828962 2828962 PRJNA1123309_P_NODE_3343_length_772_cov_2.333333_g3034_i0 PRJNA1123309 3343 772 2.333333 18.01333076 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 199 1.47e-58   NR KAH3759264.1 1580589 g3034 i0 48.1 0.816062176165803 210 101 78.5 4 4 609 124 333 KAH3759264.1 polyhydroxybutyrate depolymerase [Pelomyxa schiedti] diamond 630 199 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
4105393 4105393 PRJNA1123309_P_NODE_37884_length_276_cov_1.142857_g37504_i0 PRJNA1123309 37884 276 1.142857 3.15428532 Physarum polycephalum 5791 Evosea other_Eukaryota 239 1.82e-58   NTclustered gi|119552593|gb|EF140724.1| 5791 g37504 i0 85.526 20.6050724637681 228 33 83 0 26 253 354 127 Physarum polycephalum 14-3-3-like protein mRNA, complete cds blastn 5687 239 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
4105458 4105458 PRJNA1123309_P_NODE_43044_length_263_cov_1.231579_g42664_i0 PRJNA1123309 43044 263 1.231579 3.23905277 Dictyostelium purpureum 5786 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|330796061|ref|XM_003286040.1| 5786 g42664 i0 87.755 0.186311787072243 49 4 18 2 214 260 1025 977 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_150027), partial mRNA blastn 49 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
5381350 5381350 PRJNA1123309_P_NODE_26145_length_315_cov_2.198347_g25765_i0 PRJNA1123309 26145 315 2.198347 6.92479305 Dictyostelium discoideum 44689 Evosea other_Eukaryota 58.4 6.34e-4   NTclustered gi|66815696|ref|XM_636773.1| 352472 g25765 i0 100 0.212698412698413 31 0 10 0 222 252 5488 5518 Dictyostelium discoideum AX4 DEP domain containing protein (DDB_G0279099) mRNA, complete cds blastn 67 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
5381390 5381390 PRJNA1123309_P_NODE_29765_length_298_cov_1.333333_g29385_i0 PRJNA1123309 29765 298 1.333333 3.97333234 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.028   NTclustered gi|330837833|ref|XM_003292006.1| 5786 g29385 i0 100 0.0939597315436242 28 0 9 0 19 46 613 640 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_156733), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
6655877 6655877 PRJNA1123309_P_NODE_12066_length_438_cov_1.783562_g11690_i0 PRJNA1123309 12066 438 1.783562 7.81200156 Dictyosteliaceae 2058185 Evosea other_Eukaryota 182 5.179999999999999e-52   NR XP_003294810.1 5786 g11690 i0 66 3.94520547945205 147 43 97.3 3 12 437 180 324 XP_003294810.1 uncharacterized protein DICPUDRAFT_100069 [Dictyostelium purpureum] diamond 1728 183 0.994535519125683 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
6656479 6656479 PRJNA1123309_P_NODE_66466_length_242_cov_0.923077_g66086_i0 PRJNA1123309 66466 242 0.923077 2.23384634 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 5.04e-31   NR XP_004366065.1 261658 g66086 i0 68.8 10.4256198347107 77 24 95.5 0 231 1 81 157 XP_004366065.1 60S ribosomal protein L4 [Cavenderia fasciculata] diamond 2523 122 0.991803278688525 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
11232304 11232304 PRJNA1123309_P_NODE_30189_length_296_cov_1.381166_g29809_i0 PRJNA1123309 30189 296 1.381166 4.08825136 root 1 Root_unresolved Root_unresolved 355 1.87e-93   NTclustered gi|909719646|gb|KT185626.1| 5755 g29809 i0 88.333 51.2871621621622 300 29 99 5 3 296 3965 3666 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15181 355 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14306921 14306921 PRJNA1123309_P_NODE_12172_length_436_cov_2.173554_g11796_i0 PRJNA1123309 12172 436 2.173554 9.47669544 Dictyostelium purpureum 5786 Evosea other_Eukaryota 333 1.34e-86   NTclustered gi|330791897|ref|XM_003283980.1| 5786 g11796 i0 81.132 44.947247706422 424 73 97 5 5 426 1462 1044 Dictyostelium purpureum 26S proteasome ATPase 2 subunit (DICPUDRAFT_96551), mRNA blastn 19597 333 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
14307267 14307267 PRJNA1123309_P_NODE_42592_length_264_cov_1.397906_g42212_i0 PRJNA1123309 42592 264 1.397906 3.69047184 Arcyria sp. 'tenuissima' 3129282 Evosea other_Eukaryota 388 1.62e-103   NTclustered gi|2698738389|gb|PP491458.1| 3129282 g42212 i0 93.536 0.996212121212121 263 13 98 2 6 264 3555 3817 Arcyria sp. 'tenuissima' voucher sc32644 internal transcribed spacer region, partial sequence blastn 263 388 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria sp. 'tenuissima'
18130192 18130192 PRJNA1123309_P_NODE_46855_length_253_cov_1.300000_g46475_i0 PRJNA1123309 46855 253 1.3 3.289 Dictyostelium purpureum 5786 Evosea other_Eukaryota 202 2.15e-47   NTclustered gi|330804280|ref|XM_003290077.1| 5786 g46475 i0 86.74 8.73913043478261 181 24 72 0 10 190 298 478 Dictyostelium purpureum ubiquitin-conjugating enzyme E2-17 kDa (DICPUDRAFT_56481), mRNA blastn 2211 202 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
26690329 26690329 PRJNA1123309_P_NODE_6901_length_565_cov_1.018293_g6541_i0 PRJNA1123309 6901 565 1.018293 5.75335545 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 46.6 0.0321   NR PRP88695.1 1890364 g6541 i0 28.2 0.753982300884956 142 88 74.3 4 437 18 462 591 PRP88695.1 hypothetical protein PROFUN_02791 [Planoprotostelium fungivorum] diamond 426 46.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
27986179 27986179 PRJNA1123309_P_NODE_57825_length_247_cov_0.896552_g57445_i0 PRJNA1123309 57825 247 0.896552 2.21448344 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 53.9 4.58e-6   NR KAH3743514.1 1580589 g57445 i0 47.7 1.08097165991903 44 23 53.4 0 17 148 181 224 KAH3743514.1 MAP kinase [Pelomyxa schiedti] diamond 267 53.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28112360 28112360 PRJNA1123309_P_NODE_55725_length_248_cov_0.891429_g55345_i0 PRJNA1123309 55725 248 0.891429 2.21074392 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 2.21e-19   NR XP_004337776.1 1257118 g55345 i0 54.5 0.931451612903226 77 26 93.1 1 15 245 96 163 XP_004337776.1 GPI anchored endo1,3(4)-beta-glucanase [Acanthamoeba castellanii str. Neff] diamond 231 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28333446 28333446 PRJNA1123309_P_NODE_17446_length_374_cov_0.900332_g17067_i0 PRJNA1123309 17446 374 0.900332 3.36724168 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 82 2.89e-15   NR PRP86479.1 1890364 g17067 i0 45.5 0.810160427807487 101 51 80.2 3 21 320 431 528 PRP86479.1 hypothetical protein PROFUN_05261 [Planoprotostelium fungivorum] diamond 303 82 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29017677 29017677 PRJNA1123309_P_NODE_58088_length_247_cov_0.896552_g57708_i0 PRJNA1123309 58088 247 0.896552 2.21448344 Eumycetozoa 142796 Evosea other_Eukaryota 68.9 2.32e-11   NR XP_640601.1 352472 g57708 i0 47.4 3.72874493927126 76 38 92.3 2 8 235 180 253 XP_640601.1 protein kinase 1 [Dictyostelium discoideum AX4] diamond 921 68.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29659200 29659200 PRJNA1123309_P_NODE_63450_length_244_cov_0.900585_g63070_i0 PRJNA1123309 63450 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.6 3.81e-13   NR XP_004344150.1 1257118 g63070 i0 45.3 0.922131147540984 75 37 91 3 222 1 86 157 XP_004344150.1 zinc finger, zz type domain containing protein [Acanthamoeba castellanii str. Neff] diamond 225 73.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29690819 29690819 PRJNA1123309_P_NODE_19430_length_358_cov_0.810526_g19051_i0 PRJNA1123309 19430 358 0.810526 2.90168308 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 100 5.99e-22   NR PRP87322.1 1890364 g19051 i0 42.7 2.42178770949721 96 55 80.4 0 357 70 451 546 PRP87322.1 calcium/calmodulin-dependent protein kinase kinase 2 beta isoform 3 [Planoprotostelium fungivorum] diamond 867 100 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30249205 30249205 PRJNA1123309_P_NODE_16912_length_379_cov_0.751634_g16533_i0 PRJNA1123309 16912 379 0.751634 2.84869286 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72.4 7.26e-12   NR XP_003283071.1 5786 g16533 i0 51.9 4.88390501319261 54 26 42.7 0 168 7 175 228 XP_003283071.1 uncharacterized protein DICPUDRAFT_15659, partial [Dictyostelium purpureum] diamond 1851 72.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
30260025 30260025 PRJNA1123309_P_NODE_48772_length_252_cov_0.871508_g48392_i0 PRJNA1123309 48772 252 0.871508 2.19620016 Cavenderia fasciculata 261658 Evosea other_Eukaryota 82.4 4.6e-16   NR XP_004358786.1 261658 g48392 i0 50 1.80952380952381 76 35 90.5 1 239 12 4303 4375 XP_004358786.1 vacuolar protein sorting-associated protein 13 family protein [Cavenderia fasciculata] diamond 456 82.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
30449542 30449542 PRJNA1123309_P_NODE_24953_length_322_cov_1.184739_g24573_i0 PRJNA1123309 24953 322 1.184739 3.81485958 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 81.6 2.07e-15   NR KAH3758309.1 1580589 g24573 i0 50.5 0.903726708074534 97 41 90.4 5 27 317 759 848 KAH3758309.1 ribonuclease P protein subunit RPR2 [Pelomyxa schiedti] diamond 291 81.6 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30544159 30544159 PRJNA1123309_P_NODE_44993_length_258_cov_1.248649_g44613_i0 PRJNA1123309 44993 258 1.248649 3.22151442 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 58.2 1.27e-7   NR XP_012756592.1 1410327 g44613 i0 43.4 0.883720930232558 76 39 88.4 1 257 30 42 113 XP_012756592.1 hypothetical protein SAMD00019534_030050 [Acytostelium subglobosum LB1] diamond 228 58.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
30955092 30955092 PRJNA1123309_P_NODE_66974_length_242_cov_0.869822_g66594_i0 PRJNA1123309 66974 242 0.869822 2.10496924 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 74.7 2.02e-13   NR KAH3756653.1 1580589 g66594 i0 48.7 1.69834710743802 76 39 94.2 0 230 3 547 622 KAH3756653.1 glycosyl hydrolase [Pelomyxa schiedti] diamond 411 74.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31049955 31049955 PRJNA1123309_P_NODE_50095_length_251_cov_1.398876_g49715_i0 PRJNA1123309 50095 251 1.398876 3.51117876 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 58.5 1.04e-7   NR XP_012755070.1 1410327 g49715 i0 36 2.21115537848606 86 46 94.4 2 14 250 5 88 XP_012755070.1 hypothetical protein SAMD00019534_051450 [Acytostelium subglobosum LB1] diamond 555 58.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
31081339 31081339 PRJNA1123309_P_NODE_46075_length_255_cov_1.291209_g45695_i0 PRJNA1123309 46075 255 1.291209 3.29258295 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 99.8 3.79e-22   NR XP_636821.1 352472 g45695 i0 61.3 2.85882352941176 80 31 94.1 0 8 247 627 706 XP_636821.1 threonyl-tRNA synthetase [Dictyostelium discoideum AX4] diamond 729 99.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
31164914 31164914 PRJNA1123309_P_NODE_62875_length_244_cov_0.912281_g62495_i0 PRJNA1123309 62875 244 0.912281 2.22596564 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 79.3 5.05e-15   NR KYR00392.1 361077 g62495 i0 57.8 8.27459016393443 64 27 78.7 0 220 29 1054 1117 KYR00392.1 DEAD/DEAH box helicase domain-containing protein [Tieghemostelium lacteum] diamond 2019 79.7 0.994981179422836 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32251847 32251847 PRJNA1123309_P_NODE_21258_length_345_cov_1.121324_g20879_i0 PRJNA1123309 21258 345 1.121324 3.8685678 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 70.1 3.11e-11   NR PRP87573.1 1890364 g20879 i0 40 0.608695652173913 70 42 60.9 0 224 15 711 780 PRP87573.1 hypothetical protein PROFUN_04600 [Planoprotostelium fungivorum] diamond 210 70.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32693809 32693809 PRJNA1123309_P_NODE_54360_length_249_cov_0.886364_g53980_i0 PRJNA1123309 54360 249 0.886364 2.20704636 Polysphondylium violaceum 133409 Evosea other_Eukaryota 130 5.799999999999999e-33   NR KAF2074465.1 133409 g53980 i0 70 1.92771084337349 80 24 96.4 0 240 1 380 459 KAF2074465.1 hypothetical protein CYY_004210 [Polysphondylium violaceum] diamond 480 130 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32819828 32819828 PRJNA1123309_P_NODE_24980_length_322_cov_0.911647_g24600_i0 PRJNA1123309 24980 322 0.911647 2.93550334 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 85.1 7.21e-17   NR PRP89226.1 1890364 g24600 i0 48.2 0.773291925465838 83 39 77.3 2 63 311 26 104 PRP89226.1 hypothetical protein PROFUN_02100 [Planoprotostelium fungivorum] diamond 249 85.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;