RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1122875" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1122875 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30354993 30354993 PRJNA1122875_P_NODE_31712_length_290_cov_1.419355_g31488_i0 PRJNA1122875 31712 290 1.419355 4.1161295 Nitrosopumilus sp. 2024843 Archaea Archaea 43.5 0.0351   NR MBI1664090.1 2024843 g31488 i0 27.4 0.982758620689655 95 68 97.2 1 287 6 252 346 MBI1664090.1 fibronectin type III domain-containing protein [Nitrosopumilus sp.] diamond 285 43.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
30638755 30638755 PRJNA1122875_P_NODE_8193_length_571_cov_0.993976_g7975_i0 PRJNA1122875 8193 571 0.993976 5.67560296 Nitrosopumilus sp. 2024843 Archaea Archaea 52.8 7.81e-5   NR MDH3766400.1 2024843 g7975 i0 33.3 1.12959719789842 87 53 43.6 2 1 249 93 178 MDH3766400.1 class I SAM-dependent methyltransferase [Nitrosopumilus sp.] diamond 645 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;