RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1122875", tax_phylum = "Mycoplasmatota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1122875 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25255085 25255085 PRJNA1122875_P_NODE_35060_length_279_cov_3.126214_g34836_i0 PRJNA1122875 35060 279 3.126214 8.72213706 FCB group 1783270 Bacteria Bacteria 90.5 9.74e-22   NR PAT02477.1 2024899 g34836 i0 62.3 21.3333333333333 61 23 65.6 0 206 24 3 63 PAT02477.1 cold-shock protein [Candidatus Izimaplasma bacterium ZiA1] diamond 5952 90.9 0.995599559955996 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. ZiA1
29912396 29912396 PRJNA1122875_P_NODE_48891_length_246_cov_0.890173_g48667_i0 PRJNA1122875 48891 246 0.890173 2.18982558 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 60.1 8.4e-10   NR MDR2829404.1 2685873 g48667 i0 51 0.621951219512195 51 25 62.2 0 90 242 4 54 MDR2829404.1 30S ribosomal protein S18 [Mycoplasmataceae bacterium] diamond 153 60.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium
31112595 31112595 PRJNA1122875_P_NODE_37515_length_271_cov_1.388889_g37291_i0 PRJNA1122875 37515 271 1.388889 3.76388919 Metamycoplasma faucium 56142 Bacteria Bacteria 172 1.1099999999999998e-47   NR WP_405311890.1 56142 g37291 i0 98.9 0.996309963099631 90 1 99.6 0 2 271 163 252 WP_405311890.1 DEAD/DEAH box helicase [Metamycoplasma faucium] diamond 270 172 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;