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contig_metadata

32 rows where bioproject = "PRJNA1122875", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 32 ✖

tax_phylum 1

  • Bdellovibrionota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1122875 · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2304035 2304035 PRJNA1122875_P_NODE_29042_length_304_cov_2.103896_g28818_i0 PRJNA1122875 29042 304 2.103896 6.39584384 Bacteriovorax 146784 Bacteria Bacteria 446 1.11e-120   NTclustered gi|1700689994|gb|CP030035.1| 960 g28818 i0 93.16 55.0888157894737 307 15 100 6 1 304 1661912 1661609 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 16747 446 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
4104537 4104537 PRJNA1122875_P_NODE_18184_length_391_cov_1.883648_g17960_i0 PRJNA1122875 18184 391 1.883648 7.36506368 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 153 4.52e-43   NR MCB0370750.1 2053517 g17960 i0 74 0.767263427109974 100 25 76 1 387 91 59 158 MCB0370750.1 inositol-3-phosphate synthase [Bdellovibrionales bacterium] diamond 300 153 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
4856700 4856700 PRJNA1122875_P_NODE_21804_length_355_cov_2.393617_g21580_i0 PRJNA1122875 21804 355 2.393617 8.49734035 Micavibrio 213485 Bacteria Bacteria 342 1.78e-89   NTclustered gi|469926873|gb|CP003538.1| 349215 g21580 i0 84.167 280.588732394366 360 49 100 8 1 355 463176 462820 Micavibrio aeruginosavorus EPB, complete genome blastn 99609 342 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
5380732 5380732 PRJNA1122875_P_NODE_27265_length_316_cov_1.555556_g27041_i0 PRJNA1122875 27265 316 1.555556 4.91555696 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 86.1 2.92e-12   NTclustered gi|578016248|gb|CP002190.1| 765869 g27041 i0 89.706 7.7373417721519004 68 6 22 1 11 78 802897 802831 Bdellovibrio bacteriovorus W, complete genome blastn 2445 86.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
7930603 7930603 PRJNA1122875_P_NODE_35487_length_278_cov_1.502439_g35263_i0 PRJNA1122875 35487 278 1.502439 4.17678042 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 164 2.47e-49   NR MCB0369647.1 2053517 g35263 i0 82.6 2.93525179856115 92 16 99.3 0 3 278 82 173 MCB0369647.1 uL30 family ribosomal protein [Bdellovibrionales bacterium] diamond 816 164 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
9205605 9205605 PRJNA1122875_P_NODE_2908_length_860_cov_2.878018_g2737_i0 PRJNA1122875 2908 860 2.878018 24.7509548 Oligoflexia bacterium 2599941 Bacteria Bacteria 208 2.55e-60   NR MBC7385198.1 2599941 g2737 i0 56.7 0.676744186046512 194 81 67.7 2 852 271 222 412 MBC7385198.1 M20/M25/M40 family metallo-hydrolase [Oligoflexia bacterium] diamond 582 208 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
11232075 11232075 PRJNA1122875_P_NODE_33989_length_283_cov_1.466667_g33765_i0 PRJNA1122875 33989 283 1.466667 4.15066761 Bacteriovorax 146784 Bacteria Bacteria 448 2.8499999999999996e-121   NTclustered gi|1700689994|gb|CP030035.1| 960 g33765 i0 95.39 185.388692579505 282 11 99 2 1 281 1662160 1661880 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 52465 448 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
11756170 11756170 PRJNA1122875_P_NODE_30810_length_294_cov_1.389140_g30586_i0 PRJNA1122875 30810 294 1.38914 4.0840716 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 118 2.01e-31   NR MBL7556335.1 2026715 g30586 i0 77.9 0.693877551020408 68 15 69.4 0 206 3 3 70 MBL7556335.1 glutathione peroxidase [Pseudobdellovibrionaceae bacterium] diamond 204 118 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
23229855 23229855 PRJNA1122875_P_NODE_22599_length_349_cov_1.623188_g22375_i0 PRJNA1122875 22599 349 1.623188 5.66492612 Bdellovibrio sp. HCB-162 3394234 Bacteria Bacteria 52.8 0.033   NTclustered gi|2898207634|gb|CP178861.1| 3394234 g22375 i0 100 0.0802292263610315 28 0 8 0 132 159 11082 11055 Bdellovibrio sp. HCB-162 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB-162
23229965 23229965 PRJNA1122875_P_NODE_33199_length_285_cov_2.665094_g32975_i0 PRJNA1122875 33199 285 2.665094 7.5955179 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 156 1.5899999999999999e-46   NR MCB0370127.1 2053517 g32975 i0 91.9 0.905263157894737 86 7 90.5 0 28 285 72 157 MCB0370127.1 40S ribosomal protein S14 [Bdellovibrionales bacterium] diamond 258 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26880459 26880459 PRJNA1122875_P_NODE_25961_length_325_cov_1.222222_g25737_i0 PRJNA1122875 25961 325 1.222222 3.9722215 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 111 1.11e-26   NR MBL7715503.1 2053517 g25737 i0 76.8 1.27384615384615 69 16 63.7 0 117 323 2 70 MBL7715503.1 acyl-CoA dehydrogenase family protein [Bdellovibrionales bacterium] diamond 414 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26975201 26975201 PRJNA1122875_P_NODE_53742_length_241_cov_0.916667_g53518_i0 PRJNA1122875 53742 241 0.916667 2.20916747 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 60.5 3.47e-9   NR HPI39717.1 2026715 g53518 i0 59.6 0.5850622406639 47 19 58.5 0 1 141 109 155 HPI39717.1 chemotaxis protein CheW [Pseudobdellovibrionaceae bacterium] diamond 141 60.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27228066 27228066 PRJNA1122875_P_NODE_23363_length_345_cov_0.882353_g23139_i0 PRJNA1122875 23363 345 0.882353 3.04411785 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 93.6 1.86e-19   NR MBL7545404.1 2026715 g23139 i0 68.8 0.669565217391304 77 22 66.1 2 3 230 1034 1109 MBL7545404.1 cadherin-like domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 231 93.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27418082 27418082 PRJNA1122875_P_NODE_50603_length_244_cov_0.900585_g50379_i0 PRJNA1122875 50603 244 0.900585 2.1974274 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 119 1.07e-30   NR MEK6555199.1 3034175 g50379 i0 69.1 5.97540983606557 81 24 99.6 1 244 2 106 185 MEK6555199.1 2-hydroxyacid dehydrogenase [Bdellovibrionota bacterium] diamond 1458 119 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27859699 27859699 PRJNA1122875_P_NODE_42805_length_251_cov_1.853933_g42581_i0 PRJNA1122875 42805 251 1.853933 4.65337183 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 85.1 2.29e-18   NR MCB0369154.1 2053517 g42581 i0 62.5 0.764940239043825 64 24 76.5 0 2 193 95 158 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 192 85.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28459925 28459925 PRJNA1122875_P_NODE_33366_length_285_cov_1.452830_g33142_i0 PRJNA1122875 33366 285 1.45283 4.1405655 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 42.7 0.048   NR MBX3019429.1 2026715 g33142 i0 33 0.957894736842105 91 55 91.6 3 24 284 43 131 MBX3019429.1 outer membrane protein assembly factor BamD [Pseudobdellovibrionaceae bacterium] diamond 273 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28901615 28901615 PRJNA1122875_P_NODE_50048_length_244_cov_2.251462_g49824_i0 PRJNA1122875 50048 244 2.251462 5.49356728 Pseudobacteriovorax antillogorgiicola 1513793 Bacteria Bacteria 99.8 2.3000000000000003e-22   NR WP_132319756.1 1513793 g49824 i0 64 3.5655737704918 75 27 92.2 0 225 1 392 466 WP_132319756.1 3-oxoacyl-ACP reductase [Pseudobacteriovorax antillogorgiicola] diamond 870 99.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax antillogorgiicola
28996804 28996804 PRJNA1122875_P_NODE_45848_length_249_cov_0.875000_g45624_i0 PRJNA1122875 45848 249 0.875 2.17875 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 99 1.7599999999999994e-23   NR MCK6599726.1 2026715 g45624 i0 75.4 0.783132530120482 65 16 78.3 0 247 53 157 221 MCK6599726.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 195 99 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29059722 29059722 PRJNA1122875_P_NODE_22508_length_350_cov_1.101083_g22284_i0 PRJNA1122875 22508 350 1.101083 3.8537905 Bacteriovoracales bacterium 2497611 Bacteria Bacteria 146 3.12e-39   NR MDC0255033.1 2497611 g22284 i0 62.6 0.985714285714286 115 42 98.6 1 6 350 83 196 MDC0255033.1 hypothetical protein [Bacteriovoracales bacterium] diamond 345 146 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales     Bacteriovoracales bacterium
29059738 29059738 PRJNA1122875_P_NODE_33188_length_285_cov_3.391509_g32964_i0 PRJNA1122875 33188 285 3.391509 9.66580065 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 159 8.59e-45   NR MCB0368368.1 2053517 g32964 i0 83 0.989473684210526 94 16 98.9 0 2 283 157 250 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 282 159 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29301539 29301539 PRJNA1122875_P_NODE_23089_length_347_cov_1.153285_g22865_i0 PRJNA1122875 23089 347 1.153285 4.00189895 Bdellovibrio 958 Bacteria Bacteria 177 1.48e-51   NR MBC7465500.1 28201 g22865 i0 73 12.9250720461095 115 31 99.4 0 1 345 268 382 MBC7465500.1 cystathionine gamma-synthase [Bdellovibrio sp.] diamond 4485 177 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29711553 29711553 PRJNA1122875_P_NODE_33590_length_284_cov_1.848341_g33366_i0 PRJNA1122875 33590 284 1.848341 5.24928844 Bacteria 2 Bacteria Bacteria 115 5.48e-31   NR NUM60499.1 2026715 g33366 i0 76.1 1.47887323943662 71 17 75 0 43 255 1 71 NUM60499.1 response regulator [Pseudobdellovibrionaceae bacterium] diamond 420 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29869833 29869833 PRJNA1122875_P_NODE_31471_length_291_cov_1.128440_g31247_i0 PRJNA1122875 31471 291 1.12844 3.2837604 Bdellovibrio 958 Bacteria Bacteria 124 6.409999999999999e-32   NR MEN0057906.1 28201 g31247 i0 71.8 7.75257731958763 85 24 87.6 0 1 255 245 329 MEN0057906.1 acyl-CoA dehydrogenase family protein [Bdellovibrio sp.] diamond 2256 125 0.992 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30386474 30386474 PRJNA1122875_P_NODE_16213_length_415_cov_1.520468_g15989_i0 PRJNA1122875 16213 415 1.520468 6.3099422 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 169 2.83e-51   NR MCB0368223.1 2053517 g15989 i0 78.3 0.766265060240964 106 23 76.6 0 98 415 17 122 MCB0368223.1 cation transporting ATPase C-terminal domain-containing protein [Bdellovibrionales bacterium] diamond 318 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30575404 30575404 PRJNA1122875_P_NODE_21573_length_357_cov_2.827465_g21349_i0 PRJNA1122875 21573 357 2.827465 10.09405005 Pigmentibacter ruber 2683196 Bacteria Bacteria 62.8 7.67e-9   NR WP_158997865.1 2683196 g21349 i0 57.7 0.436974789915966 52 22 43.7 0 3 158 203 254 WP_158997865.1 hypothetical protein [Pigmentibacter ruber] diamond 156 62.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
30638730 30638730 PRJNA1122875_P_NODE_40973_length_258_cov_1.908108_g40749_i0 PRJNA1122875 40973 258 1.908108 4.92291864 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 102 1.21e-25   NR NUM59322.1 2026715 g40749 i0 62.3 0.895348837209302 77 28 88.4 1 30 257 55 131 NUM59322.1 GyrI-like domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 231 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30765247 30765247 PRJNA1122875_P_NODE_35334_length_279_cov_1.072816_g35110_i0 PRJNA1122875 35334 279 1.072816 2.99315664 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 101 1.69e-24   NR HTL11156.1 3034175 g35110 i0 47.3 0.978494623655914 91 48 97.8 0 277 5 80 170 HTL11156.1 hypothetical protein [Bdellovibrionota bacterium] diamond 273 101 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30828408 30828408 PRJNA1122875_P_NODE_35574_length_278_cov_1.190244_g35350_i0 PRJNA1122875 35574 278 1.190244 3.30887832 Halobacteriovorax sp. GB3 2719615 Bacteria Bacteria 87 1.04e-19   NR WP_337961799.1 2719615 g35350 i0 79.6 1.59712230215827 49 10 52.9 0 175 29 1 49 WP_337961799.1 50S ribosomal protein L21 [Halobacteriovorax sp. GB3] diamond 444 87 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. GB3
31492400 31492400 PRJNA1122875_P_NODE_28036_length_311_cov_0.970588_g27812_i0 PRJNA1122875 28036 311 0.970588 3.01852868 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 78.2 1.03e-16   NR MCB0368860.1 2053517 g27812 i0 73.9 1.77491961414791 46 12 44.4 0 311 174 18 63 MCB0368860.1 hypothetical protein [Bdellovibrionales bacterium] diamond 552 78.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31618753 31618753 PRJNA1122875_P_NODE_43916_length_250_cov_1.740113_g43692_i0 PRJNA1122875 43916 250 1.740113 4.3502825 Micavibrio sp. 2024841 Bacteria Bacteria 59.7 2.88e-8   NR MBX2833619.1 2024841 g43692 i0 51.9 0.648 54 25 63.6 1 18 176 212 265 MBX2833619.1 carbonic anhydrase family protein [Micavibrio sp.] diamond 162 59.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
31871757 31871757 PRJNA1122875_P_NODE_47757_length_247_cov_0.885057_g47533_i0 PRJNA1122875 47757 247 0.885057 2.18609079 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 103 6.34e-24   NR MCB0368459.1 2053517 g47533 i0 65 0.97165991902834 80 28 97.2 0 3 242 109 188 MCB0368459.1 hypothetical protein [Bdellovibrionales bacterium] diamond 240 103 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31966563 31966563 PRJNA1122875_P_NODE_19138_length_381_cov_1.792208_g18914_i0 PRJNA1122875 19138 381 1.792208 6.82831248 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 221 2.23e-71   NR MCB0369646.1 2053517 g18914 i0 85.4 0.968503937007874 123 18 96.9 0 3 371 49 171 MCB0369646.1 50S ribosomal protein L22 [Bdellovibrionales bacterium] diamond 369 221 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;