RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA1122875", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 27 ✖

tax_kingdom 1

  • Pseudomonadati · 27 ✖

bioproject 1

  • PRJNA1122875 · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2828350 2828350 PRJNA1122875_P_NODE_3423_length_811_cov_3.867209_g3237_i0 PRJNA1122875 3423 811 3.867209 31.36306499 Geotalea daltonii 1203471 Bacteria Bacteria 54.7 0.023   NTclustered gi|221562406|gb|CP001390.1| 316067 g3237 i0 92.308 0.0480887792848335 39 2 5 1 62 99 3441075 3441113 Geobacter daltonii FRC-32, complete genome blastn 39 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea daltonii
2828499 2828499 PRJNA1122875_P_NODE_46223_length_248_cov_0.880000_g45999_i0 PRJNA1122875 46223 248 0.88 2.1824 Desulfovibrio sp. 885 Bacteria Bacteria 175 6.83e-53   NR MCX4310444.1 885 g45999 i0 100 0.991935483870968 82 0 99.2 0 2 247 42 123 MCX4310444.1 prolipoprotein diacylglyceryl transferase [Desulfovibrio sp.] diamond 246 175 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
6655679 6655679 PRJNA1122875_P_NODE_47226_length_247_cov_1.097701_g47002_i0 PRJNA1122875 47226 247 1.097701 2.71132147 Geomonas paludis 2740185 Bacteria Bacteria 54.7 0.006   NTclustered gi|2233265061|gb|CP096574.1| 2740185 g47002 i0 96.875 0.129554655870445 32 1 13 0 216 247 3521945 3521914 Geomonas paludis strain RG22 chromosome, complete genome blastn 32 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas paludis
7406545 7406545 PRJNA1122875_P_NODE_15206_length_428_cov_1.735211_g14982_i0 PRJNA1122875 15206 428 1.735211 7.42670308 Syntrophales bacterium 2928017 Bacteria Bacteria 218 2.78e-65   NR MDO8785014.1 2928017 g14982 i0 66.2 12.946261682243 142 47 99.5 1 426 1 280 420 MDO8785014.1 phosphoenolpyruvate carboxykinase (GTP) [Syntrophales bacterium] diamond 5541 218 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
9205884 9205884 PRJNA1122875_P_NODE_52768_length_242_cov_0.911243_g52544_i0 PRJNA1122875 52768 242 0.911243 2.20520806 Desulfobotulus sp. 1940337 Bacteria Bacteria 85.5 3.24e-17   NR WP_320353836.1 1940337 g52544 i0 59.1 0.818181818181818 66 27 81.8 0 241 44 410 475 WP_320353836.1 acyl CoA:acetate/3-ketoacid CoA transferase [Desulfobotulus sp.] diamond 198 85.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobotulus Desulfobotulus sp.
20678834 20678834 PRJNA1122875_P_NODE_11957_length_481_cov_1.848039_g11734_i0 PRJNA1122875 11957 481 1.848039 8.88906759 uncultured Syntrophus sp. 228671 Bacteria Bacteria 62.1 7.79e-5   NTclustered gi|2621703419|emb|OY762510.1| 228671 g11734 i0 89.796 0.218295218295218 49 4 10 1 427 474 201943 201991 MAG: uncultured Syntrophus sp. isolate ce8641d8-6ba7-4885-b5ca-0195441cf687 genome assembly, chromosome: 1 blastn 105 62.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus uncultured Syntrophus sp.
26753301 26753301 PRJNA1122875_P_NODE_54021_length_241_cov_0.916667_g53797_i0 PRJNA1122875 54021 241 0.916667 2.20916747 Syntrophales bacterium 2928017 Bacteria Bacteria 111 1.89e-26   NR HPN10256.1 2928017 g53797 i0 67.5 2.97510373443983 80 26 99.6 0 2 241 535 614 HPN10256.1 nucleoside-diphosphate sugar epimerase/dehydratase [Syntrophales bacterium] diamond 717 111 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
26901318 26901318 PRJNA1122875_P_NODE_14401_length_440_cov_1.040872_g14177_i0 PRJNA1122875 14401 440 1.040872 4.5798368 Bacteria 2 Bacteria Bacteria 136 2.8e-36   NR HAR32551.1 2294 g14177 i0 51.5 11.3795454545455 136 58 92.7 1 3 410 155 282 HAR32551.1 3-oxosteroid 1-dehydrogenase [Desulfobacter sp.] diamond 5007 137 0.992700729927007 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter sp.
26995843 26995843 PRJNA1122875_P_NODE_41102_length_258_cov_1.248649_g40878_i0 PRJNA1122875 41102 258 1.248649 3.22151442 Thermodesulfobacteriota 200940 Bacteria Bacteria 89.4 1.81e-18   NR WP_084554044.1 231440 g40878 i0 50 3.01162790697674 86 43 100 0 1 258 69 154 WP_084554044.1 NAD-dependent malic enzyme [Desulfopila aestuarii] diamond 777 89.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfopila Desulfopila aestuarii
27228035 27228035 PRJNA1122875_P_NODE_10763_length_506_cov_1.602771_g10542_i0 PRJNA1122875 10763 506 1.602771 8.11002126 Desulfobacterales bacterium 2044940 Bacteria Bacteria 94.7 1.62e-19   NR MCU0563932.1 2044940 g10542 i0 37 0.960474308300395 162 96 94.3 2 505 29 187 345 MCU0563932.1 carboxypeptidase regulatory-like domain-containing protein [Desulfobacterales bacterium] diamond 486 94.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
27280717 27280717 PRJNA1122875_P_NODE_39423_length_264_cov_1.612565_g39199_i0 PRJNA1122875 39423 264 1.612565 4.2571716 Thermodesulfobacteriota 200940 Bacteria Bacteria 61.2 5.71e-9   NR WP_011939322.1 351604 g39199 i0 44 2.93181818181818 84 45 93.2 1 260 15 41 124 WP_011939322.1 protease inhibitor I42 family protein [Geotalea uraniireducens] diamond 774 61.6 0.993506493506494 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
27480918 27480918 PRJNA1122875_P_NODE_25483_length_328_cov_1.996078_g25259_i0 PRJNA1122875 25483 328 1.996078 6.54713584 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 45.8 0.00841   NR MCP4020984.1 2049433 g25259 i0 52.5 0.365853658536585 40 18 36.6 1 30 149 2016 2054 MCP4020984.1 amino acid adenylation domain-containing protein [Desulfobacteraceae bacterium] diamond 120 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
27891257 27891257 PRJNA1122875_P_NODE_21625_length_357_cov_1.292254_g21401_i0 PRJNA1122875 21625 357 1.292254 4.61334678 Desulfobacula sp. 2593537 Bacteria Bacteria 45.4 0.0149   NR MCP4673026.1 2593537 g21401 i0 26.2 1.09243697478992 130 79 98.3 3 4 354 223 348 MCP4673026.1 DUF3418 domain-containing protein [Desulfobacula sp.] diamond 390 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula sp.
28385797 28385797 PRJNA1122875_P_NODE_43806_length_251_cov_0.865169_g43582_i0 PRJNA1122875 43806 251 0.865169 2.17157419 Thermodesulfobacteriota 200940 Bacteria Bacteria 86.3 8.87e-18   NR MCL6622620.1 2282155 g43582 i0 62 5.33067729083665 71 27 84.9 0 230 18 135 205 MCL6622620.1 NAD(P)-dependent glycerol-3-phosphate dehydrogenase [Syntrophobacterales bacterium] diamond 1338 86.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales     Syntrophobacterales bacterium
28512104 28512104 PRJNA1122875_P_NODE_13387_length_455_cov_2.183246_g13163_i0 PRJNA1122875 13387 455 2.183246 9.9337693 Pseudomonadati 3379134 Bacteria Bacteria 219 1.6299999999999998e-66   NR WP_072906653.1 57040 g13163 i0 65.1 5.75604395604396 146 51 96.3 0 442 5 314 459 WP_072906653.1 asparagine--tRNA ligase [Malonomonas rubra] diamond 2619 220 0.995454545454545 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Malonomonas Malonomonas rubra
28554622 28554622 PRJNA1122875_P_NODE_28087_length_310_cov_1.949367_g27863_i0 PRJNA1122875 28087 310 1.949367 6.0430377 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 78.6 7.28e-15   NR MFC1858079.1 2202153 g27863 i0 44.7 0.909677419354839 94 51 90 1 300 22 133 226 MFC1858079.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 282 78.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29028360 29028360 PRJNA1122875_P_NODE_2768_length_871_cov_1.922306_g2602_i0 PRJNA1122875 2768 871 1.922306 16.74328526 Desulfobacterales bacterium 2044940 Bacteria Bacteria 158 1.83e-39   NR MBF0100972.1 2044940 g2602 i0 34.9 0.936854190585534 272 169 91.6 4 868 71 467 736 MBF0100972.1 carbohydrate-binding protein [Desulfobacterales bacterium] diamond 816 158 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
29248957 29248957 PRJNA1122875_P_NODE_25549_length_328_cov_1.196078_g25325_i0 PRJNA1122875 25549 328 1.196078 3.92313584 Syntrophales bacterium 2928017 Bacteria Bacteria 64.7 1.94e-10   NR HLE16848.1 2928017 g25325 i0 45.2 1.66463414634146 62 34 56.7 0 5 190 79 140 HLE16848.1 Hsp20/alpha crystallin family protein [Syntrophales bacterium] diamond 546 64.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
30512398 30512398 PRJNA1122875_P_NODE_10413_length_513_cov_2.518182_g10193_i0 PRJNA1122875 10413 513 2.518182 12.91827366 Desulfarculaceae bacterium 2528248 Bacteria Bacteria 65.5 5.85e-10   NR MCF8043161.1 2528248 g10193 i0 40.4 2.12280701754386 94 51 55 2 106 387 52 140 MCF8043161.1 Hsp20/alpha crystallin family protein [Desulfarculaceae bacterium] diamond 1089 65.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae   Desulfarculaceae bacterium
30627878 30627878 PRJNA1122875_P_NODE_46793_length_248_cov_0.880000_g46569_i0 PRJNA1122875 46793 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 98.6 1.0699999999999997e-23   NR MDB4303473.1 2027861 g46569 i0 63.5 2.72177419354839 74 27 89.5 0 225 4 101 174 MDB4303473.1 AAA family ATPase [Desulfosarcina sp.] diamond 675 99.4 0.991951710261569 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina sp.
30670352 30670352 PRJNA1122875_P_NODE_12173_length_477_cov_1.641089_g11950_i0 PRJNA1122875 12173 477 1.641089 7.82799453 Desulfobacca sp. 2067990 Bacteria Bacteria 55.1 1.44e-5   NR MDD3580436.1 2067990 g11950 i0 48 1.0125786163522 50 21 31.4 1 435 286 226 270 MDD3580436.1 archaemetzincin [Desulfobacca sp.] diamond 483 55.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales Desulfobaccaceae Desulfobacca Desulfobacca sp.
30670369 30670369 PRJNA1122875_P_NODE_23673_length_342_cov_1.568773_g23449_i0 PRJNA1122875 23673 342 1.568773 5.36520366 Desulfovibrio aminophilus 81425 Bacteria Bacteria 112 2.9e-26   NR WP_027176993.1 81425 g23449 i0 72.4 4.01754385964912 76 21 66.7 0 111 338 1 76 WP_027176993.1 hydroxylamine reductase [Desulfovibrio aminophilus] diamond 1374 112 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aminophilus
30817675 30817675 PRJNA1122875_P_NODE_43334_length_251_cov_0.865169_g43110_i0 PRJNA1122875 43334 251 0.865169 2.17157419 FCB group 1783270 Bacteria Bacteria 43.1 0.0182   NR RUM88750.1 1874629 g43110 i0 37.5 3.76494023904382 56 34 65.7 1 4 168 103 158 RUM88750.1 MAG: peptide deformylase [Thermodesulfatator sp.] diamond 945 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfatatoraceae Thermodesulfatator Thermodesulfatator sp.
30860063 30860063 PRJNA1122875_P_NODE_6114_length_644_cov_1.562172_g5900_i0 PRJNA1122875 6114 644 1.562172 10.06038768 Desulfarculaceae bacterium 2528248 Bacteria Bacteria 72.4 3.32e-11   NR MCB2228602.1 2528248 g5900 i0 25.5 0.93167701863354 200 115 92.7 7 47 643 59 225 MCB2228602.1 hypothetical protein [Desulfarculaceae bacterium] diamond 600 72.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae   Desulfarculaceae bacterium
30955062 30955062 PRJNA1122875_P_NODE_53954_length_241_cov_0.916667_g53730_i0 PRJNA1122875 53954 241 0.916667 2.20916747 Desulfobacterales bacterium 2044940 Bacteria Bacteria 132 7.519999999999998e-35   NR MDJ0669282.1 2044940 g53730 i0 82.5 0.995850622406639 80 14 99.6 0 2 241 112 191 MDJ0669282.1 2-isopropylmalate synthase [Desulfobacterales bacterium] diamond 240 132 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
31039136 31039136 PRJNA1122875_P_NODE_6315_length_635_cov_3.222420_g6099_i0 PRJNA1122875 6315 635 3.22242 20.462367 Bacteria 2 Bacteria Bacteria 80.9 8.85e-14   NR WP_254278414.1 35554 g6099 i0 28.4 1.79055118110236 169 113 76.1 2 545 63 170 338 WP_254278414.1 ammonium transporter [Geobacter sulfurreducens] diamond 1137 80.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
32346697 32346697 PRJNA1122875_P_NODE_46699_length_248_cov_0.880000_g46475_i0 PRJNA1122875 46699 248 0.88 2.1824 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 70.5 2.44e-13   NR MBC2734148.1 2049433 g46475 i0 47.8 0.810483870967742 67 34 81 1 246 46 59 124 MBC2734148.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 201 70.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;