RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1122875", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1122875 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27164808 27164808 PRJNA1122875_P_NODE_28442_length_308_cov_1.374468_g28218_i0 PRJNA1122875 28442 308 1.374468 4.23336144 Lentisphaeria bacterium 2053569 Bacteria Bacteria 45.1 0.0117   NR MBO4490583.1 2053569 g28218 i0 64.5 0.301948051948052 31 11 30.2 0 186 278 134 164 MBO4490583.1 hypothetical protein [Lentisphaeria bacterium] diamond 93 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
28617780 28617780 PRJNA1122875_P_NODE_44907_length_249_cov_1.789773_g44683_i0 PRJNA1122875 44907 249 1.789773 4.45653477 Lentisphaeria bacterium 2053569 Bacteria Bacteria 82 5.1e-16   NR MFA4945290.1 2053569 g44683 i0 57.1 1.83132530120482 77 25 92.8 3 241 11 57 125 MFA4945290.1 glycoside hydrolase family 125 protein [Lentisphaeria bacterium] diamond 456 82 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
32030096 32030096 PRJNA1122875_P_NODE_27398_length_315_cov_1.743802_g27174_i0 PRJNA1122875 27398 315 1.743802 5.4929763 Lentisphaeraceae bacterium 2461380 Bacteria Bacteria 122 6.4e-30   NR MCM8537036.1 2461380 g27174 i0 55.3 1.97142857142857 103 40 98.1 1 310 2 269 365 MCM8537036.1 hydroxylamine reductase [Lentisphaeraceae bacterium] diamond 621 122 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae   Lentisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;