RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1122875", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Binatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1122875 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20679173 20679173 PRJNA1122875_P_NODE_41597_length_256_cov_1.387978_g41373_i0 PRJNA1122875 41597 256 1.387978 3.55322368 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 52.8 0.023   NTclustered gi|2814788338|emb|OY761159.2| 2838779 g41373 i0 96.774 0.12109375 31 1 12 0 207 237 454373 454343 MAG: Candidatus Binatia bacterium isolate a3054953-5fa8-48fb-90a5-e173aac96f7a genome assembly, chromosome: 1 blastn 31 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
28996800 28996800 PRJNA1122875_P_NODE_43668_length_251_cov_0.865169_g43444_i0 PRJNA1122875 43668 251 0.865169 2.17157419 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 150 2.929999999999999e-41   NR HEX6175279.1 2838779 g43444 i0 89.2 1.9840637450199201 83 9 99.2 0 251 3 89 171 HEX6175279.1 glycine/betaine/sarcosine/D-proline family reductase selenoprotein B [Candidatus Binatia bacterium] diamond 498 150 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
31998412 31998412 PRJNA1122875_P_NODE_48918_length_246_cov_0.890173_g48694_i0 PRJNA1122875 48918 246 0.890173 2.18982558 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 47 5.38e-4   NR MFQ5539060.1 2838779 g48694 i0 55.6 0.548780487804878 45 20 54.9 0 137 3 4 48 MFQ5539060.1 SRPBCC domain-containing protein [Candidatus Binatia bacterium] diamond 135 47 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;