RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1122875", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1122875 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8681918 8681918 PRJNA1122875_P_NODE_27367_length_315_cov_2.884298_g27143_i0 PRJNA1122875 27367 315 2.884298 9.0855387 Tubulinea 555369 Tubulinea other_Eukaryota 582 8.459999999999998e-162   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g27143 i0 100 85.4095238095238 315 0 100 0 1 315 701 1015 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 26904 582 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
20155024 20155024 PRJNA1122875_P_NODE_11016_length_500_cov_3.882904_g10795_i0 PRJNA1122875 11016 500 3.882904 19.41452 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 268 4.459999999999999e-67   NTclustered gi|49356809|gb|AY605213.1| 282480 g10795 i0 85.551 40.662 263 30 60 6 147 407 649 905 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 20331 270 0.992592592592593 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea
28670090 28670090 PRJNA1122875_P_NODE_38847_length_266_cov_1.766839_g38623_i0 PRJNA1122875 38847 266 1.766839 4.69979174 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.1 2.15e-6   NR AAD37351.1 5775 g38623 i0 48.1 1.46616541353383 54 28 60.9 0 104 265 10 63 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 390 55.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29817288 29817288 PRJNA1122875_P_NODE_51311_length_243_cov_1.129412_g51087_i0 PRJNA1122875 51311 243 1.129412 2.74447116 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 55.5 2.13e-7   NR ABD72565.1 5778 g51087 i0 63.9 0.864197530864197 36 13 44.4 0 242 135 66 101 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 210 55.5 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30765232 30765232 PRJNA1122875_P_NODE_24794_length_333_cov_2.707692_g24570_i0 PRJNA1122875 24794 333 2.707692 9.01661436 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 114 7.43e-29   NR AAY21191.1 5778 g24570 i0 62.2 1.76576576576577 98 37 88.3 0 1 294 149 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 588 114 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31797539 31797539 PRJNA1122875_P_NODE_32177_length_289_cov_1.069444_g31953_i0 PRJNA1122875 32177 289 1.069444 3.09069316 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 2.12e-23   NR AAD37351.1 5775 g31953 i0 66.3 4.77508650519031 80 26 82 1 51 287 274 353 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 1380 103 0.990291262135922 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;