RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120771" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30259916 30259916 PRJNA1120771_S_NODE_13932_length_298_cov_3.411765_g13532_i0 PRJNA1120771 13932 298 3.411765 10.1670597 Ignavibacteria bacterium 2053306 Bacteria Bacteria 44.7 0.0134   NR MBM4165376.1 2053306 g13532 i0 59.1 0.916107382550336 44 15 44.3 1 2 133 242 282 MBM4165376.1 pantoate--beta-alanine ligase [Ignavibacteria bacterium] diamond 273 44.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31998355 31998355 PRJNA1120771_S_NODE_35978_length_204_cov_3.236025_g35578_i0 PRJNA1120771 35978 204 3.236025 6.601491 Ignavibacteria bacterium 2053306 Bacteria Bacteria 45.4 0.00259   NR MBV6477761.1 2053306 g35578 i0 39.1 1.01470588235294 69 41 100 1 204 1 37 105 MBV6477761.1 hypothetical protein [Ignavibacteria bacterium] diamond 207 45.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
32599426 32599426 PRJNA1120771_S_NODE_6920_length_382_cov_6.634218_g6520_i0 PRJNA1120771 6920 382 6.634218 25.34271276 Ignavibacteria bacterium GWB2_36_8 1798425 Bacteria Bacteria 79.7 2e-14   NR OGU45427.1 1798425 g6520 i0 49.5 0.808900523560209 103 45 78.5 4 3 302 147 245 OGU45427.1 MAG: hypothetical protein A2000_16220 [Ignavibacteria bacterium GWB2_36_8] diamond 309 79.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium GWB2_36_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;