RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120771" and tax_phylum = "Duplornaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Duplornaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9204611 9204611 PRJNA1120771_S_NODE_27408_length_230_cov_2.299465_g27008_i0 PRJNA1120771 27408 230 2.299465 5.2887695 Geotrichum candidum totivirus 3a 2971328 Viruses Viruses 398 2.2899999999999997e-106   NTclustered gi|2284067729|gb|ON862169.1| 2971328 g27008 i0 97.826 2 230 5 100 0 1 230 2215 1986 Geotrichum candidum totivirus 3a isolate GcTV3a-HK1, complete genome blastn 460 398 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Geotrichum candidum totivirus 3a
15579500 15579500 PRJNA1120771_S_NODE_26833_length_232_cov_1.820106_g26433_i0 PRJNA1120771 26833 232 1.820106 4.22264592 Geotrichum candidum totivirus 3b 2971329 Viruses Viruses 248 2.47e-61   NTclustered gi|2284067732|gb|ON862170.1| 2971329 g26433 i0 86.087 1.98275862068966 230 32 99 0 3 232 4139 3910 Geotrichum candidum totivirus 3b isolate GcTV3b-E1, complete genome blastn 460 248 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Geotrichum candidum totivirus 3b
24502493 24502493 PRJNA1120771_S_NODE_15200_length_289_cov_4.426829_g14800_i0 PRJNA1120771 15200 289 4.426829 12.79353581 Geotrichum candidum totivirus 3a 2971328 Viruses Viruses 318 2.39e-82   NTclustered gi|2284067729|gb|ON862169.1| 2971328 g14800 i0 86.552 1.00346020761246 290 38 100 1 1 289 2212 2501 Geotrichum candidum totivirus 3a isolate GcTV3a-HK1, complete genome blastn 290 318 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Geotrichum candidum totivirus 3a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;