RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120771" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120771 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18128320 18128320 PRJNA1120771_S_NODE_24375_length_242_cov_1.085427_g23975_i0 PRJNA1120771 24375 242 1.085427 2.62673334 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 58.4 4.69e-4   NTclustered gi|663071213|gb|CP007139.1| 661478 g23975 i0 100 0.247933884297521 31 0 13 0 204 234 2605590 2605560 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 60 58.4 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
28206911 28206911 PRJNA1120771_S_NODE_20466_length_259_cov_1.208333_g20066_i0 PRJNA1120771 20466 259 1.208333 3.12958247 Capsulimonas sp. 2494211 Bacteria Bacteria 67 1.24e-10   NR WP_348221661.1 2494211 g20066 i0 56.1 0.764478764478765 66 27 76.4 1 11 208 367 430 WP_348221661.1 serpin family protein [Capsulimonas sp.] diamond 198 67 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas sp.
31671178 31671178 PRJNA1120771_S_NODE_11797_length_317_cov_2.795620_g11397_i0 PRJNA1120771 11797 317 2.79562 8.8621154 Bacteria 2 Bacteria Bacteria 167 1.25e-49   NR WP_184201702.1 685828 g11397 i0 86.3 16.1545741324921 95 13 89.9 0 315 31 163 257 WP_184201702.1 glucose 1-dehydrogenase [Armatimonas rosea] diamond 5121 167 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;