RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1120771", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21430542 21430542 PRJNA1120771_S_NODE_9057_length_348_cov_1.973770_g8657_i0 PRJNA1120771 9057 348 1.97377 6.8687196 root 1 Root_unresolved Root_unresolved 107 3.45e-27   NR MBL7544407.1 2026715 g8657 i0 51.9 10.0344827586207 108 52 93.1 0 25 348 4 111 MBL7544407.1 50S ribosomal protein L14 [Pseudobdellovibrionaceae bacterium] diamond 3492 108 0.990740740740741 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29091322 29091322 PRJNA1120771_S_NODE_8428_length_357_cov_4.095541_g8028_i0 PRJNA1120771 8428 357 4.095541 14.62108137 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 86.3 7.92e-17   NR MBS1969835.1 2053517 g8028 i0 90.2 0.34453781512605 41 4 34.5 0 164 42 1434 1474 MBS1969835.1 endonuclease/exonuclease/phosphatase family protein [Bdellovibrionales bacterium] diamond 123 86.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30544069 30544069 PRJNA1120771_S_NODE_4153_length_460_cov_2.076739_g3758_i0 PRJNA1120771 4153 460 2.076739 9.5529994 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 67.8 7.5e-10   NR MBS1969835.1 2053517 g3758 i0 56.1 0.371739130434783 57 25 37.2 0 2 172 1412 1468 MBS1969835.1 endonuclease/exonuclease/phosphatase family protein [Bdellovibrionales bacterium] diamond 171 67.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;