RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1120771" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA1120771 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8681758 8681758 PRJNA1120771_S_NODE_31707_length_217_cov_0.988506_g31307_i0 PRJNA1120771 31707 217 0.988506 2.14505802 Fusobacterium 848 Bacteria Bacteria 381 2.1499999999999995e-101   NTclustered gi|1370537877|gb|CP028108.1| 860 g31307 i0 100 94.9308755760369 206 0 95 0 1 206 2376536 2376331 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 20600 381 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
12507335 12507335 PRJNA1120771_S_NODE_33130_length_213_cov_1.023529_g32730_i0 PRJNA1120771 33130 213 1.023529 2.18011677 Fusobacterium 848 Bacteria Bacteria 52.8 0.019   NTclustered gi|2705015041|gb|CP084068.1| 856 g32730 i0 100 0.525821596244131 28 0 13 0 3 30 2683125 2683152 Fusobacterium varium strain SB064 chromosome, complete genome blastn 112 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
14305474 14305474 PRJNA1120771_S_NODE_24812_length_240_cov_2.131980_g24412_i0 PRJNA1120771 24812 240 2.13198 5.116752 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 368 1.89e-97   NTclustered gi|922689899|gb|CP012410.1| 712357 g24412 i0 94.538 9.8875 238 13 99 0 1 238 1047815 1047578 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 2373 368 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
15056255 15056255 PRJNA1120771_S_NODE_35772_length_205_cov_2.123457_g35372_i0 PRJNA1120771 35772 205 2.123457 4.35308685 Leptotrichia 32067 Bacteria Bacteria 379 7.229999999999999e-101   NTclustered gi|470484715|ref|NR_076664.1| 40542 g35372 i0 100 479.770731707317 205 0 100 0 1 205 1181 977 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 98353 379 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
16853960 16853960 PRJNA1120771_S_NODE_4414_length_450_cov_4.707617_g4016_i0 PRJNA1120771 4414 450 4.707617 21.1842765 Leptotrichia wadei 157687 Bacteria Bacteria 785 0   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g4016 i0 100 213.715555555556 425 0 94 0 1 425 2298896 2299320 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 96172 785 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
19402549 19402549 PRJNA1120771_S_NODE_34616_length_209_cov_1.698795_g34216_i0 PRJNA1120771 34616 209 1.698795 3.55048155 Leptotrichia wadei 157687 Bacteria Bacteria 219 1.71e-52   NTclustered gi|1791353085|dbj|AP019829.2| 157687 g34216 i0 92.208 0.736842105263158 154 12 74 0 53 206 572148 572301 Leptotrichia wadei JCM16777 DNA, complete genome blastn 154 219 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;