RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120771", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26721494 26721494 PRJNA1120771_S_NODE_26801_length_232_cov_2.227513_g26401_i0 PRJNA1120771 26801 232 2.227513 5.16783016 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 75.9 2.69e-15   NR ETO06965.1 46433 g26401 i0 58.3 0.775862068965517 60 22 75 2 232 59 89 147 ETO06965.1 hypothetical protein RFI_30425 [Reticulomyxa filosa] diamond 180 75.9 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27386372 27386372 PRJNA1120771_S_NODE_19023_length_266_cov_2.340807_g18623_i0 PRJNA1120771 19023 266 2.340807 6.22654662 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 57 2.1e-7   NR ETO26558.1 46433 g18623 i0 50.9 0.620300751879699 55 27 62 0 264 100 142 196 ETO26558.1 hypothetical protein RFI_10581 [Reticulomyxa filosa] diamond 165 57 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27733812 27733812 PRJNA1120771_S_NODE_26724_length_232_cov_3.957672_g26324_i0 PRJNA1120771 26724 232 3.957672 9.18179904 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 65.1 1.98e-10   NR ETO23731.1 46433 g26324 i0 43 1.02155172413793 79 43 99.6 1 1 231 155 233 ETO23731.1 hypothetical protein RFI_13446, partial [Reticulomyxa filosa] diamond 237 65.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;