RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1120771", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6131469 6131469 PRJNA1120771_S_NODE_7465_length_372_cov_1.899696_g7065_i0 PRJNA1120771 7465 372 1.899696 7.06686912 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 226 1.97e-54   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g7065 i0 80.061 69.7043010752688 326 48 86 14 5 324 20146 19832 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 25930 228 0.991228070175439 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
9204520 9204520 PRJNA1120771_S_NODE_14168_length_296_cov_11.181818_g13768_i0 PRJNA1120771 14168 296 11.181818 33.09818128 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99.4 4.28e-22   NR CEP00240.1 37360 g13768 i0 86.5 2.10810810810811 52 7 52.7 0 295 140 363 414 CEP00240.1 hypothetical protein PBRA_007974 [Plasmodiophora brassicae] diamond 624 99.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26626893 26626893 PRJNA1120771_S_NODE_17141_length_277_cov_2.230769_g16741_i0 PRJNA1120771 17141 277 2.230769 6.17923013 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67.4 1.17e-10   NR CEP00348.1 37360 g16741 i0 37.4 1.97111913357401 91 57 98.6 0 3 275 504 594 CEP00348.1 hypothetical protein PBRA_001402 [Plasmodiophora brassicae] diamond 546 67.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32473136 32473136 PRJNA1120771_S_NODE_15859_length_285_cov_2.458678_g15459_i0 PRJNA1120771 15859 285 2.458678 7.0072323 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0324   NR CEO97121.1 37360 g15459 i0 58.8 0.357894736842105 34 14 35.8 0 3 104 41 74 CEO97121.1 hypothetical protein PBRA_005725 [Plasmodiophora brassicae] diamond 102 43.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;