RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1120771", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1120771 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29186108 29186108 PRJNA1120771_S_NODE_21289_length_255_cov_1.372642_g20889_i0 PRJNA1120771 21289 255 1.372642 3.5002371 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52.8 1.25e-5   NR MEI6343602.1 2026799 g20889 i0 38.8 0.788235294117647 67 34 70.6 1 24 203 595 661 MEI6343602.1 glycosyltransferase [Verrucomicrobiota bacterium] diamond 201 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29659095 29659095 PRJNA1120771_S_NODE_14110_length_297_cov_1.964567_g13710_i0 PRJNA1120771 14110 297 1.964567 5.83476399 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 78.2 2.28e-14   NR MBV8532608.1 2026799 g13710 i0 47.6 3.42424242424242 82 40 82.8 2 293 48 380 458 MBV8532608.1 UTP--glucose-1-phosphate uridylyltransferase [Verrucomicrobiota bacterium] diamond 1017 78.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31302413 31302413 PRJNA1120771_S_NODE_5775_length_408_cov_2.131507_g5375_i0 PRJNA1120771 5775 408 2.131507 8.69654856 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 61.2 8.1e-8   NR MBI2948831.1 2026799 g5375 i0 38.2 0.654411764705882 89 55 65.4 0 1 267 664 752 MBI2948831.1 choice-of-anchor D domain-containing protein [Verrucomicrobiota bacterium] diamond 267 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31618693 31618693 PRJNA1120771_S_NODE_20676_length_258_cov_1.195349_g20276_i0 PRJNA1120771 20676 258 1.195349 3.08400042 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0431   NR MEP6662696.1 2026799 g20276 i0 65.2 0.267441860465116 23 8 26.7 0 90 158 191 213 MEP6662696.1 amino acid permease [Verrucomicrobiota bacterium] diamond 69 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;