RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120771", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1120771 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5379720 5379720 PRJNA1120771_S_NODE_17805_length_273_cov_2.095652_g17405_i0 PRJNA1120771 17805 273 2.095652 5.72112996 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 427 3.5599999999999992e-115   NTclustered gi|971146634|emb|LN879502.1| 389348 g17405 i0 94.872 158.285714285714 273 14 100 0 1 273 1249737 1250009 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 43212 427 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
7406434 7406434 PRJNA1120771_S_NODE_2926_length_530_cov_4.154004_g2549_i0 PRJNA1120771 2926 530 4.154004 22.0162212 Candidatus Protochlamydia 282132 Bacteria Bacteria 750 0   NTclustered gi|1691252667|emb|BX908798.2| 264201 g2549 i0 93.01 176.754716981132 515 35 97 1 1 514 1249814 1250328 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 93680 750 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
27354754 27354754 PRJNA1120771_S_NODE_27103_length_231_cov_1.845745_g26703_i0 PRJNA1120771 27103 231 1.845745 4.26367095 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 70.1 2.25e-12   NR MBA3722841.1 2052176 g26703 i0 87.5 0.831168831168831 32 4 41.6 0 230 135 205 236 MBA3722841.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 192 70.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;