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contig_metadata

16 rows where bioproject = "PRJNA1120771", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 16 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 16 ✖

bioproject 1

  • PRJNA1120771 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2827226 2827226 PRJNA1120771_S_NODE_16283_length_282_cov_3.958159_g15883_i0 PRJNA1120771 16283 282 3.958159 11.16200838 Pristionchus pacificus 54126 Nematoda Nematoda 65.9 9.97e-11   NR KAF8358470.1 54126 g15883 i0 50.7 1.69148936170213 67 33 71.3 0 74 274 70 136 KAF8358470.1 hypothetical protein PRIPAC_93465, partial [Pristionchus pacificus] diamond 477 65.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
6131451 6131451 PRJNA1120771_S_NODE_32765_length_214_cov_1.362573_g32365_i0 PRJNA1120771 32765 214 1.362573 2.91590622 Pristionchus 54125 Nematoda Nematoda 106 1.43e-18   NTclustered gi|150984424|gb|EF634854.1| 54126 g32365 i0 91.026 12.5093457943925 78 7 36 0 83 160 495 572 Pristionchus pacificus small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 2677 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
9204496 9204496 PRJNA1120771_S_NODE_11348_length_321_cov_6.348921_g10948_i0 PRJNA1120771 11348 321 6.348921 20.38003641 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.008   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10948 i0 100 0.0903426791277259 29 0 9 0 293 321 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14305369 14305369 PRJNA1120771_S_NODE_10572_length_329_cov_18.167832_g10172_i0 PRJNA1120771 10572 329 18.167832 59.77216728 Caenorhabditis elegans 6239 Nematoda Nematoda 219 2.88e-52   NTclustered gi|1972294218|ref|NM_001380754.2| 6239 g10172 i0 88.827 57.6717325227964 179 19 54 1 91 269 982 1159 Caenorhabditis elegans Actin-3 (act-3), mRNA blastn 18974 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14305583 14305583 PRJNA1120771_S_NODE_40712_length_183_cov_5.357143_g40312_i0 PRJNA1120771 40712 183 5.357143 9.80357169 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g40312 i0 100 0.153005464480874 28 0 15 0 156 183 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
16853857 16853857 PRJNA1120771_S_NODE_23434_length_245_cov_12.876238_g23034_i0 PRJNA1120771 23434 245 12.876238 31.5467831 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.002   NTclustered gi|687022643|emb|LM525557.1| 174720 g23034 i0 92.683 0.16734693877551 41 0 16 2 167 206 361165 361127 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 41 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
21953508 21953508 PRJNA1120771_S_NODE_42318_length_175_cov_21.901515_g41918_i0 PRJNA1120771 42318 175 21.901515 38.32765125 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.015   NTclustered gi|351062746|emb|FO081321.1| 6239 g41918 i0 100 0.8 28 0 16 0 87 114 167 194 Caenorhabditis elegans Cosmid F37F2, complete sequence blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25254912 25254912 PRJNA1120771_S_NODE_9380_length_343_cov_7.383333_g8980_i0 PRJNA1120771 9380 343 7.383333 25.32483219 Dracunculus medinensis 318479 Nematoda Nematoda 105 6.04e-24   NR VDN53311.1 318479 g8980 i0 67.1 1.21574344023324 70 23 61.2 0 3 212 350 419 VDN53311.1 unnamed protein product [Dracunculus medinensis] diamond 417 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
28701661 28701661 PRJNA1120771_S_NODE_26607_length_233_cov_1.373684_g26207_i0 PRJNA1120771 26607 233 1.373684 3.20068372 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 4.27e-23   NR CAD5234545.1 6326 g26207 i0 56.6 3.95278969957082 76 33 97.9 0 232 5 122 197 CAD5234545.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 921 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28733223 28733223 PRJNA1120771_S_NODE_29967_length_222_cov_1.452514_g29567_i0 PRJNA1120771 29967 222 1.452514 3.22458108 Nematoda 6231 Nematoda Nematoda 51.2 2.67e-5   NR KFD51108.1 68888 g29567 i0 53.3 1.21621621621622 45 21 60.8 0 5 139 222 266 KFD51108.1 hypothetical protein M513_08008 [Trichuris suis] diamond 270 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30975770 30975770 PRJNA1120771_S_NODE_9654_length_340_cov_1.737374_g9254_i0 PRJNA1120771 9654 340 1.737374 5.9070716 Rhabditida 6236 Nematoda Nematoda 94 1.26e-19   NR VDM47119.1 6265 g9254 i0 47.6 9.06176470588235 103 52 89.1 1 1 303 631 733 VDM47119.1 unnamed protein product [Toxocara canis] diamond 3081 94.7 0.992608236536431 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31007230 31007230 PRJNA1120771_S_NODE_6594_length_389_cov_2.485549_g6194_i0 PRJNA1120771 6594 389 2.485549 9.66878561 Metazoa 33208 Nematoda Nematoda 155 8.96e-41   NR NP_001033553.1 6239 g6194 i0 62.8 13.0102827763496 113 42 87.1 0 340 2 1414 1526 NP_001033553.1 Multidrug resistance-associated protein 1 [Caenorhabditis elegans] diamond 5061 156 0.993589743589744 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31260100 31260100 PRJNA1120771_S_NODE_19235_length_265_cov_1.761261_g18835_i0 PRJNA1120771 19235 265 1.761261 4.66734165 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 74.3 3.71e-13   NR NP_001293174.1 6239 g18835 i0 55.6 7.65283018867925 72 31 81.5 1 1 216 478 548 NP_001293174.1 ATP-dependent DNA helicase PIF1 [Caenorhabditis elegans] diamond 2028 74.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31702844 31702844 PRJNA1120771_S_NODE_12697_length_309_cov_1.605263_g12297_i0 PRJNA1120771 12697 309 1.605263 4.96026267 Metazoa 33208 Nematoda Nematoda 54.3 7.19e-6   NR CAD5208834.1 6326 g12297 i0 42.9 2.27184466019417 63 33 61.2 1 3 191 1151 1210 CAD5208834.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 702 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32030054 32030054 PRJNA1120771_S_NODE_12698_length_309_cov_1.597744_g12298_i0 PRJNA1120771 12698 309 1.597744 4.93702896 Meloidogyne enterolobii 390850 Nematoda Nematoda 57.4 5.44e-7   NR CAD2186823.1 390850 g12298 i0 47.9 2.71844660194175 71 30 68.9 2 307 95 342 405 CAD2186823.1 unnamed protein product [Meloidogyne enterolobii] diamond 840 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
32557392 32557392 PRJNA1120771_S_NODE_8219_length_360_cov_4.116719_g7819_i0 PRJNA1120771 8219 360 4.116719 14.8201884 Opisthokonta 33154 Nematoda Nematoda 72 5.38e-12   NR VDD93497.1 51028 g7819 i0 49.4 1.675 81 35 67.5 2 22 264 212 286 VDD93497.1 unnamed protein product [Enterobius vermicularis] diamond 603 72 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;