RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120586" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120586 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13029878 13029878 PRJNA1120586_P_NODE_3891_length_552_cov_1.720497_g3704_i0 PRJNA1120586 3891 552 1.720497 9.49714344 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 348 5.44e-110   NR MEE8596102.1 2026742 g3704 i0 100 0.994565217391304 183 0 99.5 0 551 3 19 201 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 549 348 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
20677925 20677925 PRJNA1120586_P_NODE_7237_length_433_cov_1.568681_g7046_i0 PRJNA1120586 7237 433 1.568681 6.79238873 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 252 4.57e-75   NR MEE8596102.1 2026742 g7046 i0 93.7 0.983833718244804 142 9 98.4 0 2 427 217 358 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 426 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;