RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120586" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120586 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2303698 2303698 PRJNA1120586_P_NODE_26842_length_270_cov_4.000000_g26651_i0 PRJNA1120586 26842 270 4 10.8 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 499 7.349999999999998e-137   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g26651 i0 100 99.8925925925926 270 0 100 0 1 270 45 314 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 26971 499 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
13781621 13781621 PRJNA1120586_P_NODE_22311_length_288_cov_1.643836_g22120_i0 PRJNA1120586 22311 288 1.643836 4.73424768 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 527 3.63e-145   NTclustered gi|2651357791|gb|PP174306.1| 41631 g22120 i0 99.653 97.6770833333333 288 1 100 0 1 288 1845 2132 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28131 527 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15579251 15579251 PRJNA1120586_P_NODE_51733_length_226_cov_2.394904_g51542_i0 PRJNA1120586 51733 226 2.394904 5.41248304 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 405 1.34e-108   NTclustered gi|2651357791|gb|PP174306.1| 41631 g51542 i0 99.115 32.9203539823009 226 1 99 1 2 226 2132 2357 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7440 405 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;