RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120586" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120586 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2303639 2303639 PRJNA1120586_P_NODE_13802_length_339_cov_8.281481_g13611_i0 PRJNA1120586 13802 339 8.281481 28.07422059 Pseudobdellovibrio 2862745 Bacteria Bacteria 568 2.5699999999999993e-157   NTclustered gi|507148233|ref|NR_103040.1| 453816 g13611 i0 96.774 173.094395280236 341 9 100 1 1 339 559 899 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 58679 568 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
9956544 9956544 PRJNA1120586_P_NODE_7468_length_427_cov_6.039106_g7277_i0 PRJNA1120586 7468 427 6.039106 25.78698262 Pseudobdellovibrio 2862745 Bacteria Bacteria 654 0   NTclustered gi|507148233|ref|NR_103040.1| 453816 g7277 i0 94.366 91.6393442622951 426 24 99 0 1 426 1248 1673 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 39130 654 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
10479624 10479624 PRJNA1120586_P_NODE_29289_length_263_cov_1.123711_g29098_i0 PRJNA1120586 29289 263 1.123711 2.95535993 Bacteriovorax stolpii 960 Bacteria Bacteria 226 1.3399999999999998e-54   NTclustered gi|1700689994|gb|CP030035.1| 960 g29098 i0 82.264 2.01520912547529 265 43 100 4 1 263 298958 298696 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 530 226 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;