RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120586", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1120586 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1550268 1550268 PRJNA1120586_P_NODE_11802_length_359_cov_3.034483_g11611_i0 PRJNA1120586 11802 359 3.034483 10.89379397 Taurinivorans muris 2787751 Bacteria Bacteria 102 3.33e-17   NTclustered gi|2304091556|gb|CP065938.1| 2787751 g11611 i0 95.312 0.178272980501393 64 3 18 0 296 359 1233650 1233713 Taurinivorans muris strain LT0009 chromosome, complete genome blastn 64 102 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Taurinivorans Taurinivorans muris
27480871 27480871 PRJNA1120586_P_NODE_48423_length_229_cov_0.900000_g48232_i0 PRJNA1120586 48423 229 0.9 2.061 Maridesulfovibrio salexigens 880 Bacteria Bacteria 45.4 0.00351   NR WP_015853475.1 880 g48232 i0 55.8 0.563318777292576 43 17 55 2 32 157 182 223 WP_015853475.1 hypothetical protein [Maridesulfovibrio salexigens] diamond 129 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio salexigens
30164663 30164663 PRJNA1120586_P_NODE_33072_length_252_cov_1.180328_g32881_i0 PRJNA1120586 33072 252 1.180328 2.97442656 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 45.1 0.00641   NR MCX8044671.1 2202153 g32881 i0 36.5 0.75 63 35 69 1 10 183 31 93 MCX8044671.1 radical SAM protein [Thermodesulfobacteriota bacterium] diamond 189 45.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;