RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1120586", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA1120586 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16853638 16853638 PRJNA1120586_P_NODE_51954_length_226_cov_1.541401_g51763_i0 PRJNA1120586 51954 226 1.541401 3.48356626 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 82.4 2.57e-11   NTclustered gi|2874253830|emb|OY969814.1| 1672391 g51763 i0 80.315 3.04867256637168 127 10 55 11 1 124 1625895 1626009 MAG: uncultured Chloroflexia bacterium isolate MFD01299.bin.1.79 genome assembly, chromosome: 1 blastn 689 82.4 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
27101647 27101647 PRJNA1120586_P_NODE_47182_length_230_cov_0.894410_g46991_i0 PRJNA1120586 47182 230 0.89441 2.057143 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 44.3 0.00895   NR MDD5486236.1 2026733 g46991 i0 41.5 0.847826086956522 65 35 84.8 1 26 220 368 429 MDD5486236.1 hypothetical protein [Dehalococcoidales bacterium] diamond 195 44.3 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium
28586168 28586168 PRJNA1120586_P_NODE_52387_length_226_cov_0.917197_g52196_i0 PRJNA1120586 52387 226 0.917197 2.07286522 Chloroflexota bacterium 2026724 Bacteria Bacteria 41.2 0.0424   NR MBA3851809.1 2026724 g52196 i0 35 0.79646017699115 60 39 79.6 0 191 12 23 82 MBA3851809.1 hypothetical protein [Chloroflexota bacterium] diamond 180 41.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29975311 29975311 PRJNA1120586_P_NODE_51551_length_227_cov_0.911392_g51360_i0 PRJNA1120586 51551 227 0.911392 2.06885984 Chloroflexia bacterium 2448782 Bacteria Bacteria 65.9 2.08e-11   NR MBA2276120.1 2448782 g51360 i0 53.4 1.44052863436123 58 27 76.7 0 175 2 3 60 MBA2276120.1 type II toxin-antitoxin system VapC family toxin [Chloroflexia bacterium] diamond 327 65.9 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
31196397 31196397 PRJNA1120586_P_NODE_48055_length_229_cov_0.900000_g47864_i0 PRJNA1120586 48055 229 0.9 2.061 Bacillati 1783272 Bacteria Bacteria 57.4 4.44e-8   NR MBI2761618.1 2026724 g47864 i0 55 3.117903930131 40 18 52.4 0 97 216 1 40 MBI2761618.1 transcriptional repressor NrdR [Chloroflexota bacterium] diamond 714 57.8 0.993079584775087 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32315064 32315064 PRJNA1120586_P_NODE_33099_length_252_cov_1.103825_g32908_i0 PRJNA1120586 33099 252 1.103825 2.781639 Anaerolineaceae bacterium 2024896 Bacteria Bacteria 42.7 0.0329   NR MEP6871796.1 2024896 g32908 i0 43.5 0.547619047619048 46 24 53.6 2 6 140 23 67 MEP6871796.1 phosphatase PAP2 family protein [Anaerolineaceae bacterium] diamond 138 42.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae   Anaerolineaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;