RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA1120586" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Sar · 29 ✖

bioproject 1

  • PRJNA1120586 · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
275738 275738 PRJNA1120586_P_NODE_13321_length_343_cov_15.781022_g13130_i0 PRJNA1120586 13321 343 15.781022 54.12890546 Poteriospumella lacustris 1117027 SAR_Eukaryotes SAR_Eukaryotes 623 5.479999999999999e-174   NTclustered gi|2295553597|gb|OP378946.1| 1117027 g13130 i0 99.417 100.743440233236 343 2 100 0 1 343 1678 1336 Poteriospumella lacustris isolate 1532 large subunit ribosomal RNA gene, partial sequence blastn 34555 623 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
275753 275753 PRJNA1120586_P_NODE_14281_length_335_cov_3.507519_g14090_i0 PRJNA1120586 14281 335 3.507519 11.75018865 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 603 6.9499999999999975e-168   NTclustered gi|698793876|ref|XR_717098.1| 112090 g14090 i0 99.104 83.2089552238806 335 3 100 0 1 335 2174 2508 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 27875 603 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
275884 275884 PRJNA1120586_P_NODE_22181_length_289_cov_1.113636_g21990_i0 PRJNA1120586 22181 289 1.113636 3.21840804 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 244 4.11e-60   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g21990 i0 82.877 27.7543252595156 292 30 99 11 2 289 3719 3994 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 8021 244 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
2303698 2303698 PRJNA1120586_P_NODE_26842_length_270_cov_4.000000_g26651_i0 PRJNA1120586 26842 270 4 10.8 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 499 7.349999999999998e-137   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g26651 i0 100 99.8925925925926 270 0 100 0 1 270 45 314 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 26971 499 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
2303770 2303770 PRJNA1120586_P_NODE_42322_length_233_cov_1.097561_g42131_i0 PRJNA1120586 42322 233 1.097561 2.55731713 Cyclotella 29203 SAR_Eukaryotes SAR_Eukaryotes 429 8.239999999999998e-116   NTclustered gi|2589355395|ref|NC_077461.1| 29204 g42131 i0 100 199.042918454936 232 0 99 0 2 233 69838 69607 Cyclotella cryptica chloroplast, complete genome blastn 46377 429 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
2826388 2826388 PRJNA1120586_P_NODE_12823_length_348_cov_3.666667_g12632_i0 PRJNA1120586 12823 348 3.666667 12.76000116 Poteriospumella sp. 2003111 SAR_Eukaryotes SAR_Eukaryotes 643 4.279999999999998e-180   NTclustered gi|1209404931|gb|KX442736.1| 2003111 g12632 i0 100 99.0488505747126 348 0 100 0 1 348 1158 1505 Poteriospumella sp. strain JBAS36 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34469 643 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella sp.
4103081 4103081 PRJNA1120586_P_NODE_31824_length_255_cov_1.688172_g31633_i0 PRJNA1120586 31824 255 1.688172 4.3048386 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 472 1.5e-128   NTclustered gi|859811083|gb|KM818001.1| 88167 g31633 i0 100 99.2980392156863 255 0 100 0 1 255 1956 2210 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 25321 472 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
4103155 4103155 PRJNA1120586_P_NODE_36184_length_243_cov_2.482759_g35993_i0 PRJNA1120586 36184 243 2.482759 6.03310437 Ochromonas danica 2986 SAR_Eukaryotes SAR_Eukaryotes 231 2.6199999999999997e-56   NTclustered gi|11465862|ref|NC_002571.1| 2986 g35993 i0 84.1 28.5432098765432 239 38 98 0 4 242 7567 7329 Ochromonas danica mitochondrion, complete genome blastn 6936 231 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Ochromonas Ochromonas danica
5379457 5379457 PRJNA1120586_P_NODE_47405_length_229_cov_2.350000_g47214_i0 PRJNA1120586 47405 229 2.35 5.3815 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 78.7 3.37e-10   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g47214 i0 81.188 2.79039301310044 101 16 44 3 128 227 4414 4512 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 639 78.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824
7406222 7406222 PRJNA1120586_P_NODE_26326_length_272_cov_2.009852_g26135_i0 PRJNA1120586 26326 272 2.009852 5.46679744 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 492 1.24e-134   NTclustered gi|98978879|gb|DQ512398.1| 29204 g26135 i0 99.265 99.9154411764706 272 2 100 0 1 272 106 377 Cyclotella sp. CCMP331 large subunit ribosomal RNA gene, partial sequence blastn 27177 492 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
7928958 7928958 PRJNA1120586_P_NODE_33127_length_251_cov_5.939560_g32936_i0 PRJNA1120586 33127 251 5.93956 14.9082956 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 464 2.47e-126   NTclustered gi|1578815424|gb|MK546601.1| 1982524 g32936 i0 100 100.151394422311 251 0 100 0 1 251 572 322 Aphanomyces sp. voucher CCIBt4545 large subunit ribosomal RNA gene, partial sequence blastn 25138 464 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
7929221 7929221 PRJNA1120586_P_NODE_47467_length_229_cov_1.800000_g47276_i0 PRJNA1120586 47467 229 1.8 4.122 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 135 1.97e-27   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g47276 i0 91.089 24.4541484716157 101 8 44 1 129 229 3873 3774 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 5600 135 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
10479524 10479524 PRJNA1120586_P_NODE_23189_length_284_cov_2.009302_g22998_i0 PRJNA1120586 23189 284 2.009302 5.70641768 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 484 2.1799999999999998e-132   NTclustered gi|53829555|gb|AY582830.1| 289359 g22998 i0 97.857 99.362676056338 280 6 99 0 1 280 284 5 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 28219 484 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
13781621 13781621 PRJNA1120586_P_NODE_22311_length_288_cov_1.643836_g22120_i0 PRJNA1120586 22311 288 1.643836 4.73424768 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 527 3.63e-145   NTclustered gi|2651357791|gb|PP174306.1| 41631 g22120 i0 99.653 97.6770833333333 288 1 100 0 1 288 1845 2132 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28131 527 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
14304964 14304964 PRJNA1120586_P_NODE_35732_length_244_cov_3.211429_g35541_i0 PRJNA1120586 35732 244 3.211429 7.83588676 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 451 1.86e-122   NTclustered gi|53829555|gb|AY582830.1| 289359 g35541 i0 100 6.36475409836066 244 0 100 0 1 244 1189 946 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 1553 451 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
15056180 15056180 PRJNA1120586_P_NODE_55232_length_193_cov_9.306452_g55041_i0 PRJNA1120586 55232 193 9.306452 17.96145236 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 357 3.1499999999999996e-94   NTclustered gi|291495599|gb|GU823226.1| 152704 g55041 i0 100 100 193 0 100 0 1 193 1051 859 Uncultured stramenopile clone BCA5F13RJ3F09 18S ribosomal RNA gene, partial sequence blastn 19300 357 1 Eukaryota Sar             uncultured stramenopile
15578624 15578624 PRJNA1120586_P_NODE_17213_length_314_cov_92.191837_g17022_i0 PRJNA1120586 17213 314 92.191837 289.48236818 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 448 3.2099999999999996e-121   NTclustered gi|238617605|gb|FJ973380.1| 45107 g17022 i0 92.357 93.9140127388535 314 24 100 0 1 314 1276 1589 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 29489 448 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
15579251 15579251 PRJNA1120586_P_NODE_51733_length_226_cov_2.394904_g51542_i0 PRJNA1120586 51733 226 2.394904 5.41248304 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 405 1.34e-108   NTclustered gi|2651357791|gb|PP174306.1| 41631 g51542 i0 99.115 32.9203539823009 226 1 99 1 2 226 2132 2357 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7440 405 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15579328 15579328 PRJNA1120586_P_NODE_55273_length_191_cov_9.475410_g55082_i0 PRJNA1120586 55273 191 9.47541 18.0980331 Chrysolepidomonas dendrolepidota 64707 SAR_Eukaryotes SAR_Eukaryotes 217 5.5e-52   NTclustered gi|16326553|gb|AF409121.1| 64707 g55082 i0 87.179 26.6439790575916 195 19 100 6 1 191 3724 3916 Chrysolepidomonas dendrolepidota internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 5089 217 1 Eukaryota Sar     Chrysophyceae Chromulinales Chrysolepidomonadaceae Chrysolepidomonas Chrysolepidomonas dendrolepidota
16853250 16853250 PRJNA1120586_P_NODE_28054_length_266_cov_3.959391_g27863_i0 PRJNA1120586 28054 266 3.959391 10.53198006 Ochromonas sp. SAG 933.10 984272 SAR_Eukaryotes SAR_Eukaryotes 342 1.2899999999999999e-89   NTclustered gi|323690578|gb|GU935637.1| 984272 g27863 i0 90.037 45.3195488721804 271 18 100 7 1 266 1732 1998 Ochromonas sp. SAG 933.10 28S ribosomal RNA gene, partial sequence blastn 12055 342 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Ochromonas Ochromonas sp. SAG 933.10
16853668 16853668 PRJNA1120586_P_NODE_53694_length_221_cov_2.736842_g53503_i0 PRJNA1120586 53694 221 2.736842 6.04842082 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 392 1.0199999999999999e-104   NTclustered gi|53829589|gb|AY582847.1| 289359 g53503 i0 98.643 93.8733031674208 221 3 100 0 1 221 683 903 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 actin gene, partial cds blastn 20746 392 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
18128172 18128172 PRJNA1120586_P_NODE_54975_length_206_cov_16.036496_g54784_i0 PRJNA1120586 54975 206 16.036496 33.03518176 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 209 1.01e-49   NTclustered gi|238617605|gb|FJ973380.1| 45107 g54784 i0 88.202 18.5970873786408 178 18 99 3 1 176 2187 2363 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 3831 209 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
20154867 20154867 PRJNA1120586_P_NODE_54336_length_215_cov_5.068493_g54145_i0 PRJNA1120586 54336 215 5.068493 10.89725995 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 398 2.1099999999999997e-106   NTclustered gi|1409222725|gb|MH536659.1| 88167 g54145 i0 100 25.9860465116279 215 0 100 0 1 215 2088 1874 Poterioochromonas malhamensis strain SAG933-1d small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 5587 398 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
20677897 20677897 PRJNA1120586_P_NODE_55337_length_188_cov_7.487395_g55146_i0 PRJNA1120586 55337 188 7.487395 14.0763026 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 346 6.6e-91   NTclustered gi|323690576|gb|GU935635.1| 88167 g55146 i0 100 32.3563829787234 187 0 99 0 2 188 2013 1827 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 6083 346 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
22705195 22705195 PRJNA1120586_P_NODE_14618_length_332_cov_226.079848_g14427_i0 PRJNA1120586 14618 332 226.079848 750.58509536 Poterioochromonas 88166 SAR_Eukaryotes SAR_Eukaryotes 614 3.1799999999999995e-171   NTclustered gi|323690576|gb|GU935635.1| 88167 g14427 i0 100 100.590361445783 332 0 100 0 1 332 1416 1747 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 33396 614 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
23980786 23980786 PRJNA1120586_P_NODE_6519_length_450_cov_25.391076_g6328_i0 PRJNA1120586 6519 450 25.391076 114.259842 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 832 0   NTclustered gi|2660296023|gb|PP212030.1| 88167 g6328 i0 100 51.4555555555556 450 0 100 0 1 450 303 752 Poterioochromonas malhamensis strain NIES2144 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23155 832 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
24502441 24502441 PRJNA1120586_P_NODE_8800_length_401_cov_86.954819_g8609_i0 PRJNA1120586 8800 401 86.954819 348.68882419 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 379 1.55e-100   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g8609 i0 86.226 47.3416458852868 363 34 90 9 41 401 4039 3691 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 18984 379 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
27480873 27480873 PRJNA1120586_P_NODE_5463_length_483_cov_10.002415_g5273_i0 PRJNA1120586 5463 483 10.002415 48.31166445 Ochromonas danica 2986 SAR_Eukaryotes SAR_Eukaryotes 115 2.8199999999999997e-30   NR NP_066431.1 2986 g5273 i0 82.4 1.36645962732919 74 13 46 0 270 49 1 74 NP_066431.1 ATP synthase F0 subunit 9 [Ochromonas danica] diamond 660 115 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Ochromonas Ochromonas danica
32693702 32693702 PRJNA1120586_P_NODE_52520_length_226_cov_0.917197_g52329_i0 PRJNA1120586 52520 226 0.917197 2.07286522 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 92.4 1.15e-22   NR KAJ1406109.1 483371 g52329 i0 66.2 0.86283185840708 65 21 85 1 204 13 1 65 KAJ1406109.1 hypothetical protein B484DRAFT_404254, partial [Ochromonadaceae sp. CCMP2298] diamond 195 92.4 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;