RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1120203" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120203 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5378635 5378635 PRJNA1120203_P_NODE_88365_length_247_cov_1.287356_g87349_i0 PRJNA1120203 88365 247 1.287356 3.17976932 Hippocavirus hippocampi 3429281 Viruses Viruses 451 1.88e-122   NTclustered gi|2482697087|gb|OQ030201.1| 3038090 g87349 i0 99.595 1 247 1 100 0 1 247 4295 4541 Hippocampus erectus paramyxovirus 1 isolate SD/19 nucleocapsid protein, hypothetical protein, matrix protein, fusion glycoprotein, receptor-binding protein, and RNA-dependent RNA polymerase genes, complete cds blastn 247 451 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Hippocavirus Hippocavirus hippocampi
13028354 13028354 PRJNA1120203_P_NODE_17251_length_655_cov_1.216495_g16260_i0 PRJNA1120203 17251 655 1.216495 7.96804225 Hippocavirus hippocampi 3429281 Viruses Viruses 1182 0   NTclustered gi|2482697087|gb|OQ030201.1| 3038090 g16260 i0 99.237 1.04427480916031 655 5 100 0 1 655 2342 1688 Hippocampus erectus paramyxovirus 1 isolate SD/19 nucleocapsid protein, hypothetical protein, matrix protein, fusion glycoprotein, receptor-binding protein, and RNA-dependent RNA polymerase genes, complete cds blastn 684 1182 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Hippocavirus Hippocavirus hippocampi
14304157 14304157 PRJNA1120203_P_NODE_73332_length_261_cov_1.228723_g72316_i0 PRJNA1120203 73332 261 1.228723 3.20696703 Hippocavirus hippocampi 3429281 Viruses Viruses 475 1.1899999999999999e-129   NTclustered gi|2482697087|gb|OQ030201.1| 3038090 g72316 i0 99.615 0.996168582375479 260 1 99 0 1 260 5268 5527 Hippocampus erectus paramyxovirus 1 isolate SD/19 nucleocapsid protein, hypothetical protein, matrix protein, fusion glycoprotein, receptor-binding protein, and RNA-dependent RNA polymerase genes, complete cds blastn 260 475 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Hippocavirus Hippocavirus hippocampi
15578130 15578130 PRJNA1120203_P_NODE_74353_length_259_cov_1.166667_g73337_i0 PRJNA1120203 74353 259 1.166667 3.02166753 Hippocavirus hippocampi 3429281 Viruses Viruses 479 9.13e-131   NTclustered gi|2482697087|gb|OQ030201.1| 3038090 g73337 i0 100 1 259 0 100 0 1 259 3962 3704 Hippocampus erectus paramyxovirus 1 isolate SD/19 nucleocapsid protein, hypothetical protein, matrix protein, fusion glycoprotein, receptor-binding protein, and RNA-dependent RNA polymerase genes, complete cds blastn 259 479 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Hippocavirus Hippocavirus hippocampi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;