RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120203" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1550131 1550131 PRJNA1120203_P_NODE_91462_length_246_cov_0.890173_g90446_i0 PRJNA1120203 91462 246 0.890173 2.18982558 Saccostrea echinata 191078 Mollusca Mollusca 254 5.68e-63   NTclustered gi|2628575265|ref|XM_061341548.1| 191078 g90446 i0 85.306 10.6585365853659 245 36 99 0 1 245 3350 3594 PREDICTED: Saccostrea echinata sodium-dependent serotonin transporter-like (LOC133205695), mRNA blastn 2622 254 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
11231454 11231454 PRJNA1120203_P_NODE_84989_length_249_cov_0.875000_g83973_i0 PRJNA1120203 84989 249 0.875 2.17875 Magallana 147004 Mollusca Mollusca 416 6.939999999999999e-112   NTclustered gi|2751227589|ref|XM_066073104.1| 29159 g83973 i0 96.787 8.0281124497992 249 8 100 0 1 249 1840 2088 PREDICTED: Magallana gigas uncharacterized protein (LOC136272113), transcript variant X1, mRNA blastn 1999 416 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
13028242 13028242 PRJNA1120203_P_NODE_102251_length_242_cov_0.911243_g101235_i0 PRJNA1120203 102251 242 0.911243 2.20520806 Saccostrea cuccullata 36930 Mollusca Mollusca 368 1.91e-97   NTclustered gi|2669125854|ref|XM_062740018.1| 36930 g101235 i0 95.633 1.89256198347107 229 10 95 0 14 242 1326 1554 PREDICTED: Saccostrea cucullata N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like (LOC134257397), transcript variant X1, mRNA blastn 458 368 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;