RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120203" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27006681 27006681 PRJNA1120203_P_NODE_84222_length_249_cov_0.875000_g83206_i0 PRJNA1120203 84222 249 0.875 2.17875 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 89.7 1.16e-18   NR MBN1673570.1 2212473 g83206 i0 51.9 0.975903614457831 81 38 96.4 1 241 2 319 399 MBN1673570.1 DUF5060 domain-containing protein [Kiritimatiellia bacterium] diamond 243 89.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27922876 27922876 PRJNA1120203_P_NODE_92325_length_246_cov_0.890173_g91309_i0 PRJNA1120203 92325 246 0.890173 2.18982558 Pontiella desulfatans 2750659 Bacteria Bacteria 111 3.1400000000000003e-26   NR WP_187357960.1 2750659 g91309 i0 61.7 0.98780487804878 81 31 98.8 0 243 1 516 596 WP_187357960.1 hypothetical protein [Pontiella desulfatans] diamond 243 111 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Pontiellaceae Pontiella Pontiella desulfatans
30575363 30575363 PRJNA1120203_P_NODE_88753_length_247_cov_0.885057_g87737_i0 PRJNA1120203 88753 247 0.885057 2.18609079 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 92.4 1.33e-19   NR HPF98525.1 2212473 g87737 i0 54.4 0.959514170040486 79 36 96 0 246 10 339 417 HPF98525.1 glycoside hydrolase family 66 protein [Kiritimatiellia bacterium] diamond 237 92.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;