RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1120203" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29154570 29154570 PRJNA1120203_P_NODE_98209_length_244_cov_0.900585_g97193_i0 PRJNA1120203 98209 244 0.900585 2.1974274 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 60.1 2.87e-8   NR CDW91422.1 5949 g97193 i0 43.5 0.848360655737705 69 27 70.1 1 17 187 7 75 CDW91422.1 UNKNOWN [Stylonychia lemnae] diamond 207 60.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29312175 29312175 PRJNA1120203_P_NODE_105229_length_241_cov_0.916667_g104213_i0 PRJNA1120203 105229 241 0.916667 2.20916747 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 80.1 1.56e-15   NR CDW76087.1 5949 g104213 i0 53.2 0.983402489626556 79 31 94.6 2 14 241 165 240 CDW76087.1 UNKNOWN [Stylonychia lemnae] diamond 237 80.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32409725 32409725 PRJNA1120203_P_NODE_91599_length_246_cov_0.890173_g90583_i0 PRJNA1120203 91599 246 0.890173 2.18982558 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 74.7 1.74e-13   NR CDW78366.1 5949 g90583 i0 41.5 2 82 48 100 0 1 246 105 186 CDW78366.1 UNKNOWN [Stylonychia lemnae] diamond 492 74.7 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32662085 32662085 PRJNA1120203_P_NODE_98500_length_243_cov_1.570588_g97484_i0 PRJNA1120203 98500 243 1.570588 3.81652884 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 135 1.3e-34   NR CDW72471.1 5949 g97484 i0 78.8 0.987654320987654 80 17 98.8 0 243 4 2265 2344 CDW72471.1 dynein heavy chain family protein [Stylonychia lemnae] diamond 240 135 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;