RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120203" and tax_phylum = "Candidatus Aminicenantota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Aminicenantota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4102483 4102483 PRJNA1120203_P_NODE_84704_length_249_cov_0.875000_g83688_i0 PRJNA1120203 84704 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 134 1.82e-36   NR RPJ01649.1 2052149 g83688 i0 76.5 3.92771084337349 81 19 97.6 0 6 248 127 207 RPJ01649.1 MAG: methyltransferase domain-containing protein [Candidatus Aminicenantes bacterium] diamond 978 134 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium
26837991 26837991 PRJNA1120203_P_NODE_84261_length_249_cov_0.875000_g83245_i0 PRJNA1120203 84261 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 62.4 2.21e-9   NR OGD12715.1 1797269 g83245 i0 67.4 1.03614457831325 43 14 51.8 0 249 121 190 232 OGD12715.1 MAG: hypothetical protein A2Y86_08280 [Candidatus Aminicenantes bacterium RBG_13_62_12] diamond 258 62.4 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium RBG_13_62_12
31681727 31681727 PRJNA1120203_P_NODE_79177_length_251_cov_0.865169_g78161_i0 PRJNA1120203 79177 251 0.865169 2.17157419 Candidatus Aminicenantes bacterium RBG_16_63_16 1797273 Bacteria Bacteria 129 1.1399999999999999e-32   NR OGD18838.1 1797273 g78161 i0 79.2 0.920318725099602 77 16 92 0 251 21 510 586 OGD18838.1 MAG: hypothetical protein A2W03_10040 [Candidatus Aminicenantes bacterium RBG_16_63_16] diamond 231 129 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium RBG_16_63_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;