RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120203", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11753943 11753943 PRJNA1120203_P_NODE_82730_length_250_cov_0.870056_g81714_i0 PRJNA1120203 82730 250 0.870056 2.17514 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.023   NTclustered gi|687865636|emb|LK927601.1| 6239 g81714 i0 94.286 0.28 35 1 14 1 10 43 67700 67734 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000066 blastn 70 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27101624 27101624 PRJNA1120203_P_NODE_79542_length_251_cov_0.865169_g78526_i0 PRJNA1120203 79542 251 0.865169 2.17157419 Ostertagia ostertagi 6317 Nematoda Nematoda 49.3 2.05e-4   NR KAK6024039.1 6317 g78526 i0 43.1 0.776892430278884 65 37 77.7 0 195 1 1005 1069 KAK6024039.1 primase 2 [Ostertagia ostertagi] diamond 195 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
28522946 28522946 PRJNA1120203_P_NODE_87647_length_248_cov_0.880000_g86631_i0 PRJNA1120203 87647 248 0.88 2.1824 Trichuris suis 68888 Nematoda Nematoda 128 1.2099999999999999e-32   NR KHJ43593.1 68888 g86631 i0 70.7 0.991935483870968 82 24 99.2 0 248 3 166 247 KHJ43593.1 eukaryotic translation initiation factor eIF2A [Trichuris suis] diamond 246 128 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;