RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA1120203" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 19 ✖

bioproject 1

  • PRJNA1120203 · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2826089 2826089 PRJNA1120203_P_NODE_81603_length_250_cov_0.870056_g80587_i0 PRJNA1120203 81603 250 0.870056 2.17514 Fusobacterium mortiferum 850 Bacteria Bacteria 462 8.83e-126   NTclustered gi|1370540179|gb|CP028102.1| 469616 g80587 i0 100 1 250 0 100 0 1 250 2648532 2648781 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 250 462 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
2826276 2826276 PRJNA1120203_P_NODE_94443_length_245_cov_0.895349_g93427_i0 PRJNA1120203 94443 245 0.895349 2.19360505 Fusobacterium ulcerans 861 Bacteria Bacteria 448 2.41e-121   NTclustered gi|1370545701|gb|CP028105.1| 861 g93427 i0 99.592 80.6530612244898 245 1 100 0 1 245 510003 510247 Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome blastn 19760 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans
2826302 2826302 PRJNA1120203_P_NODE_96463_length_244_cov_0.900585_g95447_i0 PRJNA1120203 96463 244 0.900585 2.1974274 Fusobacterium mortiferum 850 Bacteria Bacteria 435 1.87e-117   NTclustered gi|1370540179|gb|CP028102.1| 469616 g95447 i0 98.77 1 244 3 100 0 1 244 2241288 2241045 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 244 435 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
4856161 4856161 PRJNA1120203_P_NODE_86024_length_248_cov_0.880000_g85008_i0 PRJNA1120203 86024 248 0.88 2.1824 Fusobacterium 848 Bacteria Bacteria 268 2.05e-67   NTclustered gi|2444100754|gb|CP117525.1| 851 g85008 i0 99.324 59.4959677419355 148 1 60 0 101 248 262091 261944 Fusobacterium nucleatum strain FNV chromosome, complete genome blastn 14755 268 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
5378549 5378549 PRJNA1120203_P_NODE_83485_length_249_cov_0.875000_g82469_i0 PRJNA1120203 83485 249 0.875 2.17875 Fusobacterium mortiferum 850 Bacteria Bacteria 455 1.47e-123   NTclustered gi|1370540179|gb|CP028102.1| 469616 g82469 i0 99.598 1 249 1 100 0 1 249 782854 783102 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 249 455 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
6653114 6653114 PRJNA1120203_P_NODE_70926_length_266_cov_1.409326_g69910_i0 PRJNA1120203 70926 266 1.409326 3.74880716 Fusobacterium mortiferum 850 Bacteria Bacteria 464 2.64e-126   NTclustered gi|1370540179|gb|CP028102.1| 469616 g69910 i0 98.12 1 266 5 100 0 1 266 1183883 1183618 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 266 464 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
8681072 8681072 PRJNA1120203_P_NODE_48667_length_324_cov_1.167331_g47651_i0 PRJNA1120203 48667 324 1.167331 3.78215244 Cetobacterium 180162 Bacteria Bacteria 547 3.18e-151   NTclustered gi|2666488225|gb|CP143319.1| 188913 g47651 i0 97.214 22.2932098765432 323 9 99 0 2 324 1948736 1948414 Cetobacterium somerae strain ceto chromosome, complete genome blastn 7223 547 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11230989 11230989 PRJNA1120203_P_NODE_31289_length_420_cov_1.772334_g30274_i0 PRJNA1120203 31289 420 1.772334 7.4438028 Fusobacterium 848 Bacteria Bacteria 771 0   NTclustered gi|1370537877|gb|CP028108.1| 860 g30274 i0 99.762 489.007142857143 420 1 100 0 1 420 462627 463046 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 205383 771 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
11753996 11753996 PRJNA1120203_P_NODE_85970_length_248_cov_0.880000_g84954_i0 PRJNA1120203 85970 248 0.88 2.1824 Fusobacterium mortiferum 850 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1370540179|gb|CP028102.1| 469616 g84954 i0 100 1 248 0 100 0 1 248 1027908 1027661 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 248 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
13029228 13029228 PRJNA1120203_P_NODE_88111_length_247_cov_1.741379_g87095_i0 PRJNA1120203 88111 247 1.741379 4.30120613 Fusobacterium nucleatum 851 Bacteria Bacteria 457 4.05e-124   NTclustered gi|2704968189|gb|CP077126.1| 851 g87095 i0 100 100 247 0 100 0 1 247 1399658 1399904 Fusobacterium nucleatum strain KCOM3685 chromosome, complete genome blastn 24700 457 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
14304474 14304474 PRJNA1120203_P_NODE_94672_length_245_cov_0.895349_g93656_i0 PRJNA1120203 94672 245 0.895349 2.19360505 Fusobacterium sp. oral taxon 2 68766 Bacteria Bacteria 120 1.28e-29   NR WP_094243087.1 671211 g93656 i0 69.5 1.00408163265306 82 19 93.1 1 2 229 227 308 WP_094243087.1 autotransporter-associated N-terminal domain-containing protein, partial [Fusobacterium sp. oral taxon 203] diamond 246 120 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. oral taxon 203
14304521 14304521 PRJNA1120203_P_NODE_97412_length_244_cov_0.900585_g96396_i0 PRJNA1120203 97412 244 0.900585 2.1974274 Fusobacterium mortiferum 850 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1370540179|gb|CP028102.1| 469616 g96396 i0 100 1 244 0 100 0 1 244 1731795 1732038 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 244 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
16851832 16851832 PRJNA1120203_P_NODE_104274_length_241_cov_0.916667_g103258_i0 PRJNA1120203 104274 241 0.916667 2.20916747 Fusobacterium sp. 68766 Bacteria Bacteria 121 5.39e-32   NR WP_300453215.1 68766 g103258 i0 93.5 0.771784232365145 62 4 77.2 0 187 2 1 62 WP_300453215.1 amino acid ABC transporter substrate-binding protein [Fusobacterium sp.] diamond 186 121 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
18127043 18127043 PRJNA1120203_P_NODE_77895_length_251_cov_1.443820_g76879_i0 PRJNA1120203 77895 251 1.44382 3.6239882 Fusobacterium nucleatum 851 Bacteria Bacteria 453 5.34e-123   NTclustered gi|2705013194|gb|CP084126.1| 851 g76879 i0 99.203 98.9362549800797 251 2 100 0 1 251 157852 158102 Fusobacterium nucleatum strain KCOM2205 chromosome, complete genome blastn 24833 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
21951534 21951534 PRJNA1120203_P_NODE_36558_length_381_cov_0.811688_g35543_i0 PRJNA1120203 36558 381 0.811688 3.09253128 Fusobacterium mortiferum 850 Bacteria Bacteria 361 5.309999999999999e-95   NTclustered gi|1370540179|gb|CP028102.1| 469616 g35543 i0 100 90.4356955380577 195 0 51 0 187 381 671155 670961 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 34456 361 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
21952165 21952165 PRJNA1120203_P_NODE_79258_length_251_cov_0.865169_g78242_i0 PRJNA1120203 79258 251 0.865169 2.17157419 Fusobacterium mortiferum 850 Bacteria Bacteria 448 2.48e-121   NTclustered gi|1370540179|gb|CP028102.1| 469616 g78242 i0 98.805 3.90438247011952 251 3 100 0 1 251 2098124 2098374 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 980 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
23227943 23227943 PRJNA1120203_P_NODE_96799_length_244_cov_0.900585_g95783_i0 PRJNA1120203 96799 244 0.900585 2.1974274 Leptotrichia sp. oral taxon 218 712361 Bacteria Bacteria 435 1.87e-117   NTclustered gi|2028887161|gb|CP072377.1| 712361 g95783 i0 98.77 3.99180327868852 244 3 100 0 1 244 1907066 1906823 Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome blastn 974 435 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 218
28554571 28554571 PRJNA1120203_P_NODE_96607_length_244_cov_0.900585_g95591_i0 PRJNA1120203 96607 244 0.900585 2.1974274 Fusobacterium sp. 68766 Bacteria Bacteria 155 6.379999999999999e-43   NR WP_291254847.1 68766 g95591 i0 98.7 1.94262295081967 79 1 97.1 0 239 3 322 400 WP_291254847.1 RAMP superfamily CRISPR-associated protein [Fusobacterium sp.] diamond 474 155 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
31766052 31766052 PRJNA1120203_P_NODE_100917_length_243_cov_0.882353_g99901_i0 PRJNA1120203 100917 243 0.882353 2.14411779 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 155 1.24e-41   NR CDE92132.1 1262901 g99901 i0 97.5 2 81 2 100 0 1 243 22 102 CDE92132.1 chromosome partition protein Smc [Fusobacterium sp. CAG:815] diamond 486 155 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:815

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;