RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120203", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27354739 27354739 PRJNA1120203_P_NODE_82623_length_250_cov_0.870056_g81607_i0 PRJNA1120203 82623 250 0.870056 2.17514 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 54.7 2.46e-6   NR KAH9192666.1 100861 g81607 i0 35.5 0.912 76 49 91.2 0 249 22 257 332 KAH9192666.1 hypothetical protein AeNC1_005366 [Aphanomyces euteiches] diamond 228 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28333359 28333359 PRJNA1120203_P_NODE_97886_length_244_cov_0.900585_g96870_i0 PRJNA1120203 97886 244 0.900585 2.1974274 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0355   NR KAJ8542565.1 4785 g96870 i0 36.3 0.983606557377049 80 45 98.4 4 242 3 244 317 KAJ8542565.1 hypothetical protein ON010_g12249 [Phytophthora cinnamomi] diamond 240 42.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;