RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120203", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28206895 28206895 PRJNA1120203_P_NODE_88766_length_247_cov_0.885057_g87750_i0 PRJNA1120203 88766 247 0.885057 2.18609079 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 51.2 3.47e-5   NR ETN97393.1 46433 g87750 i0 40.9 1.08097165991903 44 26 53.4 0 17 148 23 66 ETN97393.1 wd40 protein [Reticulomyxa filosa] diamond 267 51.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29301527 29301527 PRJNA1120203_P_NODE_97709_length_244_cov_0.900585_g96693_i0 PRJNA1120203 97709 244 0.900585 2.1974274 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 54.7 2.27e-6   NR ETO32604.1 46433 g96693 i0 50 1.72131147540984 48 24 59 0 193 50 381 428 ETO32604.1 G protein b-subunit [Reticulomyxa filosa] diamond 420 54.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;