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contig_metadata

3 rows where bioproject = "PRJNA1120203", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12506807 12506807 PRJNA1120203_P_NODE_66190_length_276_cov_3.684729_g65174_i0 PRJNA1120203 66190 276 3.684729 10.16985204 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 475 1.2699999999999996e-129   NTclustered gi|1617862800|gb|MK796081.1| 90962 g65174 i0 99.615 94.2101449275362 260 1 94 0 15 274 682 423 Cryptosporidium sp. isolate 8 small subunit ribosomal RNA gene, partial sequence blastn 26002 475 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp.
13781277 13781277 PRJNA1120203_P_NODE_66251_length_276_cov_1.783251_g65235_i0 PRJNA1120203 66251 276 1.783251 4.92177276 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 464 2.75e-126   NTclustered gi|134021803|gb|EF023153.1| 404735 g65235 i0 98.485 75.4420289855072 264 3 95 1 1 263 618 881 Eimeriidae environmental sample clone Amb_18S_441 18S ribosomal RNA gene, partial sequence blastn 20822 464 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae
15055902 15055902 PRJNA1120203_P_NODE_90432_length_247_cov_0.885057_g89416_i0 PRJNA1120203 90432 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 357 4.22e-94   NTclustered gi|833494855|ref|XM_012915027.1| 5866 g89416 i0 93.361 754.983805668016 241 16 98 0 3 243 16 256 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 186481 357 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;