RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120203", tax_clade = "Opisthokonta" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1120203 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7927515 7927515 PRJNA1120203_P_NODE_107087_length_210_cov_131.540146_g106071_i0 PRJNA1120203 107087 210 131.540146 276.2343066 Holothuria paraprinceps 3027004 Echinodermata other_Eukaryota 141 3.82e-29   NTclustered gi|2442313045|gb|OQ418150.1| 3027004 g106071 i0 80.1 74.5666666666667 201 30 94 9 1 198 198 391 Holothuria paraprinceps voucher Holothuria.paraprinceps21008932 large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 15659 141 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria paraprinceps
21951300 21951300 PRJNA1120203_P_NODE_107158_length_196_cov_34.495935_g106142_i0 PRJNA1120203 107158 196 34.495935 67.6120326 Ophiura kinbergi 3253740 Echinodermata other_Eukaryota 119 1.65e-22   NTclustered gi|2549241453|dbj|LC749659.1| 1815251 g106142 i0 79.679 18.8877551020408 187 20 93 13 3 184 226 399 Ophiura kinbergi NSMT:E13942 mitochondrial gene for 16S rRNA, partial sequence blastn 3702 119 1 Eukaryota Opisthokonta Metazoa Echinodermata Ophiuroidea Amphilepidida Ophiuridae Ophiura Ophiura kinbergi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;