RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1120203", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1120203 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26817066 26817066 PRJNA1120203_P_NODE_100601_length_243_cov_0.905882_g99585_i0 PRJNA1120203 100601 243 0.905882 2.20129326 Fibrobacter sp. 35828 Bacteria Bacteria 40.8 0.0447   NR MBQ7079414.1 35828 g99585 i0 66.7 0.296296296296296 24 8 29.6 0 83 12 9 32 MBQ7079414.1 Abi family protein [Fibrobacter sp.] diamond 72 40.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
28954372 28954372 PRJNA1120203_P_NODE_86508_length_248_cov_0.880000_g85492_i0 PRJNA1120203 86508 248 0.88 2.1824 FCB group 1783270 Bacteria Bacteria 139 8.58e-39   NR WP_173468728.1 833 g85492 i0 90.8 6.43548387096774 76 7 91.9 0 21 248 1 76 WP_173468728.1 aldolase/citrate lyase family protein [Fibrobacter succinogenes] diamond 1596 139 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes
31555690 31555690 PRJNA1120203_P_NODE_98936_length_243_cov_0.905882_g97920_i0 PRJNA1120203 98936 243 0.905882 2.20129326 Fibrobacter sp. 35828 Bacteria Bacteria 83.6 1.05e-16   NR WP_290957872.1 35828 g97920 i0 53.2 1.95061728395062 79 37 97.5 0 5 241 177 255 WP_290957872.1 glycosyltransferase [Fibrobacter sp.] diamond 474 83.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31839946 31839946 PRJNA1120203_P_NODE_41817_length_352_cov_1.103943_g40802_i0 PRJNA1120203 41817 352 1.103943 3.88587936 unclassified Fibrobacter 2634177 Bacteria Bacteria 147 4.119999999999999e-40   NR WP_158278244.1 2634177 g40802 i0 57.8 0.988636363636364 116 49 98.9 0 351 4 17 132 WP_158278244.1 MULTISPECIES: CDP-glycerol glycerophosphotransferase family protein [unclassified Fibrobacter] diamond 348 147 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;