RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1120203", tax_clade = "Discoba" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA1120203 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
275091 275091 PRJNA1120203_P_NODE_57021_length_298_cov_4.857778_g56005_i0 PRJNA1120203 57021 298 4.857778 14.47617844 Euglena mutabilis 38275 Euglenozoa other_Eukaryota 272 1.9499999999999993e-68   NTclustered gi|985482797|gb|KT223519.1| 38275 g56005 i0 99.333 93.8624161073825 150 1 95 0 3 152 82505 82356 Euglena mutabilis chloroplast, complete genome blastn 27971 272 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena mutabilis
15055514 15055514 PRJNA1120203_P_NODE_48512_length_324_cov_2.597610_g47496_i0 PRJNA1120203 48512 324 2.59761 8.4162564 Euglena 3038 Euglenozoa other_Eukaryota 254 7.77e-63   NTclustered gi|156140592|gb|EF525317.1| 3040 g47496 i0 99.286 92.2037037037037 140 1 90 0 173 312 1334 1473 Euglena viridis strain ATCC PRA110 large subunit ribosomal RNA gene, partial sequence; plastid blastn 29874 254 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena viridis
15577900 15577900 PRJNA1120203_P_NODE_55653_length_302_cov_4.253275_g54637_i0 PRJNA1120203 55653 302 4.253275 12.8448905 Euglena longa 3037 Euglenozoa other_Eukaryota 255 2e-63   NTclustered gi|12545411|ref|NC_002652.1| 3037 g54637 i0 97.333 93.9271523178808 150 4 95 0 151 300 48077 48226 Euglena longa plastid, complete genome blastn 28366 255 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena longa
21951843 21951843 PRJNA1120203_P_NODE_57018_length_298_cov_10.271111_g56002_i0 PRJNA1120203 57018 298 10.271111 30.60791078 Euglena pseudoviridis 509933 Euglenozoa other_Eukaryota 278 4.2e-70   NTclustered gi|944275091|gb|KT305141.1| 509933 g56002 i0 99.346 101.322147651007 153 1 99 0 145 297 1195 1043 Euglena pseudoviridis strain SAG1224-17c large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 30194 278 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena pseudoviridis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;